RPS21P8 (ribosomal protein S21 pseudogene 8) - Rat Genome Database

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Gene: RPS21P8 (ribosomal protein S21 pseudogene 8) Homo sapiens
Analyze
Symbol: RPS21P8
Name: ribosomal protein S21 pseudogene 8
RGD ID: 6481560
HGNC Page HGNC:39705
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Related Functional Gene: RPS21  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381326,977,548 - 26,977,739 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1326,977,543 - 26,977,789 (+)EnsemblGRCh38hg38GRCh38
GRCh371327,551,685 - 27,551,876 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map13q12.13NCBI
HuRef138,373,067 - 8,373,258 (+)NCBIHuRef
CHM1_11327,520,408 - 27,520,599 (+)NCBICHM1_1
T2T-CHM13v2.01326,193,677 - 26,193,868 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:281
Count of miRNA genes:259
Interacting mature miRNAs:267
Transcripts:ENST00000413365
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium
Low 25 1 1 10 1 1 1 2 10 3
Below cutoff 70 52 11 6 19 5 23 16 18 6 51 17 1 6 16

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000413365
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1326,977,543 - 26,977,789 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RPS21P8 COSMIC
Ensembl Genes ENSG00000223782 Ensembl
GTEx ENSG00000223782 GTEx
HGNC ID HGNC:39705 ENTREZGENE
Human Proteome Map RPS21P8 Human Proteome Map
NCBI Gene RPS21P8 ENTREZGENE