RNU6-68P (RNA, U6 small nuclear 68, pseudogene) - Rat Genome Database

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Gene: RNU6-68P (RNA, U6 small nuclear 68, pseudogene) Homo sapiens
Analyze
Symbol: RNU6-68P
Name: RNA, U6 small nuclear 68, pseudogene
RGD ID: 6481538
HGNC Page HGNC:42558
Description:
Type: pseudo (Ensembl: snRNA)
RefSeq Status: INFERRED
Previously known as: RNU6-68
Related Functional Gene: RNU6-1  
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381346,410,454 - 46,410,557 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1346,410,454 - 46,410,557 (+)EnsemblGRCh38hg38GRCh38
GRCh371346,984,589 - 46,984,692 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map13q14.13NCBI
HuRef1327,782,181 - 27,782,284 (+)NCBIHuRef
CHM1_11346,953,355 - 46,953,458 (+)NCBICHM1_1
T2T-CHM13v2.01345,631,466 - 45,631,569 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics


Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 13q13.3-14.2(chr13:38558617-47502862)x1 copy number loss Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000051377]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000051377]|See cases [RCV000051377] Chr13:38558617..47502862 [GRCh38]
Chr13:39132754..48076997 [GRCh37]
Chr13:38030754..46974998 [NCBI36]
Chr13:13q13.3-14.2		 pathogenic
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:50
Count of miRNA genes:48
Interacting mature miRNAs:48
Transcripts:ENST00000516576
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system adipose tissue appendage
High
Medium 1
Low 2 3 8 3 25 3 2 1 2 1 33 8 1
Below cutoff 5 10 10 1 14 1 10 3 10 1 65 9 4 4

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000516576
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1346,410,454 - 46,410,557 (+)Ensembl
RefSeq Acc Id: NR_046938
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381346,410,454 - 46,410,557 (+)NCBI
GRCh371346,984,589 - 46,984,692 (+)NCBI
HuRef1327,782,181 - 27,782,284 (+)NCBI
CHM1_11346,953,355 - 46,953,458 (+)NCBI

Additional Information

Database Acc Id Source(s)
COSMIC RNU6-68P COSMIC
Ensembl Genes ENSG00000252385 Ensembl, ENTREZGENE
GTEx ENSG00000252385 GTEx
HGNC ID HGNC:42558 ENTREZGENE
Human Proteome Map RNU6-68P Human Proteome Map
NCBI Gene RNU6-68 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-08-20 RNU6-68P  RNA, U6 small nuclear 68, pseudogene  RNU6-68  RNA, U6 small nuclear 68  Symbol and/or name change 5135510 APPROVED