RNU6-64P (RNA, U6 small nuclear 64, pseudogene) - Rat Genome Database

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Gene: RNU6-64P (RNA, U6 small nuclear 64, pseudogene) Homo sapiens
Analyze
Symbol: RNU6-64P
Name: RNA, U6 small nuclear 64, pseudogene
RGD ID: 6481528
HGNC Page HGNC:42554
Description:
Type: pseudo (Ensembl: snRNA)
RefSeq Status: INFERRED
Previously known as: RNU6-64
RGD Orthologs
Rat
Dog
Alliance Orthologs
More Info more info ...
Related Functional Gene: RNU6-1  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381330,281,765 - 30,281,869 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1330,281,765 - 30,281,869 (+)EnsemblGRCh38hg38GRCh38
GRCh371330,855,902 - 30,856,006 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map13q12.3NCBI
HuRef1311,672,871 - 11,672,975 (+)NCBIHuRef
CHM1_11330,823,461 - 30,823,565 (+)NCBICHM1_1
T2T-CHM13v2.01329,504,236 - 29,504,340 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
RNU6-64P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381330,281,765 - 30,281,869 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1330,281,765 - 30,281,869 (+)EnsemblGRCh38hg38GRCh38
GRCh371330,855,902 - 30,856,006 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map13q12.3NCBI
HuRef1311,672,871 - 11,672,975 (+)NCBIHuRef
CHM1_11330,823,461 - 30,823,565 (+)NCBICHM1_1
T2T-CHM13v2.01329,504,236 - 29,504,340 (+)NCBIT2T-CHM13v2.0
LOC120099398
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X76,080,755 - 76,080,859 (-)NCBIGRCr8
mRatBN7.2X72,007,920 - 72,008,024 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX72,007,920 - 72,008,024 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 EnsemblX78,015,996 - 78,016,100 (-)NCBIRnor6.0rn6Rnor6.0
Cytogenetic MapXq22NCBI
LOC119864530
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha1950,520,393 - 50,520,499 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01951,869,574 - 51,869,680 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1951,869,574 - 51,869,680 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11950,513,901 - 50,514,007 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01950,648,833 - 50,648,939 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01952,047,123 - 52,047,229 (-)NCBIUU_Cfam_GSD_1.0

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:22
Count of miRNA genes:21
Interacting mature miRNAs:21
Transcripts:ENST00000517119
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium
Low 5 5 10 5 21 5 18 2 14 9 20 15 3 8
Below cutoff 29 15 10 4 10 2 27 16 24 1 32 8 2 15 15 1

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000517119
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1330,281,765 - 30,281,869 (+)Ensembl
RefSeq Acc Id: NR_046935
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381330,281,765 - 30,281,869 (+)NCBI
GRCh371330,855,902 - 30,856,006 (+)NCBI
HuRef1311,672,871 - 11,672,975 (+)NCBI
CHM1_11330,823,461 - 30,823,565 (+)NCBI

Additional Information

Database Acc Id Source(s)
COSMIC RNU6-64P COSMIC
Ensembl Genes ENSG00000252928 Ensembl, ENTREZGENE
GTEx ENSG00000252928 GTEx
HGNC ID HGNC:42554 ENTREZGENE
Human Proteome Map RNU6-64P Human Proteome Map
NCBI Gene RNU6-64 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-08-20 RNU6-64P  RNA, U6 small nuclear 64, pseudogene  RNU6-64  RNA, U6 small nuclear 64  Symbol and/or name change 5135510 APPROVED