RNU1-21P (RNA, U1 small nuclear 21, pseudogene) - Rat Genome Database

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Gene: RNU1-21P (RNA, U1 small nuclear 21, pseudogene) Homo sapiens
Analyze
Symbol: RNU1-21P
Name: RNA, U1 small nuclear 21, pseudogene
RGD ID: 6481509
HGNC Page HGNC:41947
Description:
Type: pseudo (Ensembl: snRNA)
RefSeq Status: INFERRED
RGD Orthologs
Dog
Alliance Orthologs
More Info more info ...
Related Functional Gene: RNU1-1  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3811123,763,927 - 123,764,089 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl11123,763,927 - 123,764,089 (+)EnsemblGRCh38hg38GRCh38
GRCh3711123,634,635 - 123,634,797 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map11q24.1NCBI
CHM1_111123,521,068 - 123,521,230 (+)NCBICHM1_1
T2T-CHM13v2.011123,792,719 - 123,792,881 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
RNU1-21P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3811123,763,927 - 123,764,089 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl11123,763,927 - 123,764,089 (+)EnsemblGRCh38hg38GRCh38
GRCh3711123,634,635 - 123,634,797 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map11q24.1NCBI
CHM1_111123,521,068 - 123,521,230 (+)NCBICHM1_1
T2T-CHM13v2.011123,792,719 - 123,792,881 (+)NCBIT2T-CHM13v2.0
LOC119872423
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha638,545,554 - 38,545,719 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0637,430,178 - 37,430,343 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl637,430,178 - 37,430,343 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1637,216,000 - 37,216,165 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0637,109,195 - 37,109,360 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0637,510,763 - 37,510,928 (+)NCBIUU_Cfam_GSD_1.0

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:27
Count of miRNA genes:25
Interacting mature miRNAs:25
Transcripts:ENST00000363327
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component pharyngeal arch
High
Medium
Low 21 3 1 1 6 79 2 16 1 75 6 3 1 1 1 1
Below cutoff 71 23 22 1 17 1 45 18 82 6 128 28 1 7 22 1

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000363327
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl11123,763,927 - 123,764,089 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RNU1-21P COSMIC
Ensembl Genes ENSG00000200197 Ensembl, ENTREZGENE
GTEx ENSG00000200197 GTEx
HGNC ID HGNC:41947 ENTREZGENE
Human Proteome Map RNU1-21P Human Proteome Map
NCBI Gene RNU1-21P ENTREZGENE