IGBP1-AS1 (IGBP1 antisense RNA 1) - Rat Genome Database

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Gene: IGBP1-AS1 (IGBP1 antisense RNA 1) Homo sapiens
Analyze
Symbol: IGBP1-AS1
Name: IGBP1 antisense RNA 1
RGD ID: 6481343
HGNC Page HGNC:40295
Description:
Type: ncrna (Ensembl: lncRNA)
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
NCBI Annotation Information: Genome Annotation Status: not in current annotation release
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 EnsemblX70,163,842 - 70,165,206 (-)EnsemblGRCh38hg38GRCh38
Cytogenetic MapXq13.1NCBI


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:146
Count of miRNA genes:143
Interacting mature miRNAs:145
Transcripts:ENST00000366397
Prediction methods:Miranda, Pita, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 12 2
Low 1789 973 1271 350 1235 210 2718 697 2006 208 1207 1416 148 837 1443 3
Below cutoff 600 1777 391 220 499 202 1349 1249 1583 181 209 163 22 348 1080 1

Sequence

Nucleotide Sequences
GenBank Nucleotide AL138252 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL139111 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENST00000366397
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 EnsemblX70,163,842 - 70,165,206 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC IGBP1-AS1 COSMIC
Ensembl Genes ENSG00000203588 Ensembl
GTEx ENSG00000203588 GTEx
HGNC ID HGNC:40295 ENTREZGENE
Human Proteome Map IGBP1-AS1 Human Proteome Map
NCBI Gene IGBP1-AS1 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-08-21 IGBP1-AS1  IGBP1 antisense RNA 1  IGBP1-AS1  IGBP1 antisense RNA 1 (non-protein coding)  Symbol and/or name change 5135510 APPROVED