SNRPEP9 (SNRPE pseudogene 9) - Rat Genome Database

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Gene: SNRPEP9 (SNRPE pseudogene 9) Homo sapiens
Analyze
Symbol: SNRPEP9
Name: SNRPE pseudogene 9
RGD ID: 6481010
HGNC Page HGNC:43574
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: small nuclear ribonucleoprotein polypeptide E pseudogene 9
Related Functional Gene: SNRPE  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X24,513,407 - 24,513,682 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX24,513,450 - 24,513,687 (+)EnsemblGRCh38hg38GRCh38
GRCh37X24,531,524 - 24,531,799 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic MapXp22.11NCBI
HuRefX22,273,345 - 22,273,620 (+)NCBIHuRef
CHM1_1X24,563,015 - 24,563,290 (+)NCBICHM1_1
T2T-CHM13v2.0X24,097,738 - 24,098,013 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:46
Count of miRNA genes:45
Interacting mature miRNAs:46
Transcripts:ENST00000436794
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 2 1 2
Low 52 382 31 8 223 8 398 27 100 18 79 100 39 290
Below cutoff 323 762 211 92 362 47 1021 225 589 36 298 263 49 249 665 1

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000436794
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 EnsemblX24,513,450 - 24,513,687 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC SNRPEP9 COSMIC
Ensembl Genes ENSG00000214124 Ensembl, ENTREZGENE
GTEx ENSG00000214124 GTEx
HGNC ID HGNC:43574 ENTREZGENE
Human Proteome Map SNRPEP9 Human Proteome Map
NCBI Gene SNRPEP9 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-12-25 SNRPEP9  SNRPE pseudogene 9  SNRPEP9  small nuclear ribonucleoprotein polypeptide E pseudogene 9  Symbol and/or name change 5135510 APPROVED