PPIAP27 (peptidylprolyl isomerase A pseudogene 27) - Rat Genome Database

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Gene: PPIAP27 (peptidylprolyl isomerase A pseudogene 27) Homo sapiens
Analyze
Symbol: PPIAP27
Name: peptidylprolyl isomerase A pseudogene 27
RGD ID: 6480995
HGNC Page HGNC:42646
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Related Functional Gene: PPIA  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381320,956,176 - 20,956,437 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1320,956,179 - 20,956,443 (-)EnsemblGRCh38hg38GRCh38
GRCh371321,530,315 - 21,530,576 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map13q12.11NCBI
HuRef132,333,265 - 2,333,526 (-)NCBIHuRef
CHM1_11321,498,758 - 21,499,019 (-)NCBICHM1_1
T2T-CHM13v2.01320,149,290 - 20,149,551 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:221
Count of miRNA genes:216
Interacting mature miRNAs:221
Transcripts:ENST00000453800
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium 2
Low 3 1 1 1 18 1 3 3 2 21 1
Below cutoff 34 47 25 9 41 8 59 24 41 15 44 30 1 15 42

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000453800
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1320,956,179 - 20,956,443 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC PPIAP27 COSMIC
Ensembl Genes ENSG00000234363 Ensembl, ENTREZGENE
GTEx ENSG00000234363 GTEx
HGNC ID HGNC:42646 ENTREZGENE
Human Proteome Map PPIAP27 Human Proteome Map
NCBI Gene PPIAP27 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-01-19 PPIAP27  peptidylprolyl isomerase A pseudogene 27    peptidylprolyl isomerase A (cyclophilin A) pseudogene 27  Symbol and/or name change 5135510 APPROVED