SETP17 (SET pseudogene 17) - Rat Genome Database

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Gene: SETP17 (SET pseudogene 17) Homo sapiens
Analyze
Symbol: SETP17
Name: SET pseudogene 17
RGD ID: 6480413
HGNC Page HGNC:42936
Description: INTERACTS WITH aristolochic acid A
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Related Functional Gene: SET  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381186,294,705 - 86,295,746 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1186,294,760 - 86,295,576 (+)EnsemblGRCh38hg38GRCh38
GRCh371186,005,747 - 86,006,788 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361185,672,625 - 85,690,895 (+)NCBINCBI36Build 36hg18NCBI36
Celera1183,316,488 - 83,317,278 (+)NCBICelera
Cytogenetic Map11q14.2ENTREZGENE
HuRef1182,294,225 - 82,295,015 (+)ENTREZGENEHuRef
CHM1_11185,891,601 - 85,892,566 (+)NCBICHM1_1
T2T-CHM13v2.01186,237,109 - 86,238,150 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:129
Count of miRNA genes:127
Interacting mature miRNAs:128
Transcripts:ENST00000534163
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
G62893  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371186,002,657 - 86,002,999UniSTSGRCh37
Build 361185,680,305 - 85,680,647RGDNCBI36
Celera1183,313,316 - 83,313,657RGD
Cytogenetic Map11q14.2UniSTS
HuRef1182,291,052 - 82,291,393UniSTS
TNG Radiation Hybrid Map433376.0UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium
Low 754 892 564 132 751 114 1813 627 944 72 529 834 18 408 1334
Below cutoff 1528 1842 1040 440 854 310 2254 1461 2417 271 798 677 138 758 1376 3

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000534163
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1186,294,760 - 86,295,576 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC SETP17 COSMIC
Ensembl Genes ENSG00000255222 Ensembl
GTEx ENSG00000255222 GTEx
HGNC ID HGNC:42936 ENTREZGENE
Human Proteome Map SETP17 Human Proteome Map
NCBI Gene SETP17 ENTREZGENE