Gene: Hnrnpr (heterogeneous nuclear ribonucleoprotein R) Rattus norvegicus

Analyze

Symbol:

Hnrnpr

Name:

heterogeneous nuclear ribonucleoprotein R (Ensembl:heteroous nuclear ribonucleoprotein R)

RGD ID:

631348

Description:

Enables mRNA 3'-UTR binding activity. Involved in circadian rhythm; mRNA destabilization; and negative regulation of catalytic activity. Located in axon terminus; dendrite; and growth cone. Orthologous to human HNRNPR (heterogeneous nuclear ribonucleoprotein R); PARTICIPATES IN spliceosome pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 3-chloropropane-1,2-diol; 4,4'-sulfonyldiphenol.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

Hnrpr

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Related Pseudogenes:

Hnrnpr-ps2

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	153,826,482 - 153,872,272 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	5	153,826,692 - 153,858,344 (+)	Ensembl				GRCr8
mRatBN7.2	5	148,542,999 - 148,574,888 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	148,543,044 - 148,574,867 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	5	151,240,600 - 151,272,452 (+)	NCBI	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	153,014,891 - 153,046,743 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	152,996,900 - 153,028,752 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd	5	153,446,671 - 153,478,513 (+)	NCBI
Lyon_Normotensive	5	155,435,185 - 155,467,027 (+)	NCBI
Lyon_Hypertensive	5	154,612,255 - 154,644,105 (+)	NCBI
F344_StmMcwi	5	148,183,142 - 148,214,985 (+)	NCBI
Rnor_6.0	5	154,668,194 - 154,699,967 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	154,668,179 - 154,699,966 (+)	Ensembl		Rnor_6.0 Ensembl	rn6	Rnor6.0
Rnor_5.0	5	158,435,433 - 158,467,206 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	5	155,053,567 - 155,086,482 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	5	146,943,785 - 146,975,518 (+)	NCBI		Celera
RGSC_v3.1	5	155,063,605 - 155,096,519 (+)	NCBI
Cytogenetic Map	5	q36	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Breast Cancer, Familial (ISO)

Breast Neoplasms (ISO)

cervical cancer (ISO)

Developmental Disabilities (ISO)

genetic disease (ISO)

lung cancer (ISO)

melanoma (ISO)

NEURODEVELOPMENTAL DISORDER WITH DYSMORPHIC FACIES AND SKELETAL AND BRAIN ABNORMALITIES (ISO)

Neurodevelopmental Disorders (ISO)

nonpapillary renal cell carcinoma (ISO)

ovarian serous cystadenocarcinoma (ISO)

Thyroid Carcinoma, Nonmedullary 1 (ISO)

urinary bladder cancer (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(1->4)-beta-D-glucan (ISO)

(S)-nicotine (ISO)

1,2-dimethylhydrazine (ISO)

2,2',4,4'-Tetrabromodiphenyl ether (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,6-dimethoxyphenol (ISO)

2-amino-14,16-dimethyloctadecan-3-ol (ISO)

3',5'-cyclic UMP (ISO)

3-chloropropane-1,2-diol (EXP)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-diaminodiphenylmethane (ISO)

4,4'-sulfonyldiphenol (EXP,ISO)

6-propyl-2-thiouracil (EXP)

acrylamide (EXP)

ammonium chloride (EXP)

aristolochic acid A (ISO)

Aroclor 1254 (ISO)

arsane (ISO)

arsenic atom (ISO)

arsenous acid (ISO)

atrazine (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

bisphenol AF (ISO)

bisphenol F (EXP,ISO)

buspirone (EXP)

caffeine (ISO)

carbon nanotube (ISO)

CGP 52608 (ISO)

chloropicrin (ISO)

choline (ISO)

cobalt dichloride (ISO)

dexamethasone (ISO)

diarsenic trioxide (ISO)

dibutyl phthalate (ISO)

dorsomorphin (ISO)

enzyme inhibitor (ISO)

ethyl methanesulfonate (ISO)

folic acid (ISO)

formaldehyde (ISO)

furfural (ISO)

gentamycin (EXP)

indometacin (ISO)

isoprenaline (ISO)

ivermectin (ISO)

L-methionine (ISO)

LDN-193189 (ISO)

lead(0) (ISO)

lipopolysaccharide (ISO)

mercury dibromide (ISO)

methapyrilene (EXP)

methyl methanesulfonate (ISO)

N-nitrosodiethylamine (EXP)

nicotine (ISO)

okadaic acid (ISO)

ozone (ISO)

panobinostat (ISO)

paracetamol (EXP)

pentachlorophenol (ISO)

perfluorohexanesulfonic acid (ISO)

perfluorooctane-1-sulfonic acid (ISO)

phenethyl caffeate (EXP)

phenethyl isothiocyanate (EXP)

phenobarbital (ISO)

phenylmercury acetate (ISO)

pirinixic acid (ISO)

resveratrol (ISO)

rotenone (ISO)

SB 431542 (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

sodium chloride (ISO)

sunitinib (ISO)

testosterone enanthate (ISO)

thiram (ISO)

titanium dioxide (ISO)

trichloroethene (EXP)

trichostatin A (ISO)

triphenyl phosphate (ISO)

triptonide (ISO)

tunicamycin (ISO)

valproic acid (ISO)

vincristine (ISO)

vitamin E (ISO)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

circadian rhythm (IEP)

mRNA destabilization (IMP)

negative regulation of catalytic activity (IMP)

positive regulation of mRNA catabolic process (IMP)

Cellular Component

axon terminus (IDA)

catalytic step 2 spliceosome (ISO)

cytoplasm (IEA,ISO)

dendrite (IDA)

growth cone (IDA)

nucleolus (ISO)

nucleoplasm (IEA,ISO)

nucleus (IBA,ISO)

organelle (IEA)

ribonucleoprotein complex (IBA,ISO)

Molecular Function

mRNA 3'-UTR binding (IDA)

mRNA binding (IBA)

nucleic acid binding (IEA)

RNA binding (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

spliceosome pathway (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Proteomic analysis of in vivo-assembled pre-mRNA splicing complexes expands the catalog of participating factors.	Chen YI, etal., Nucleic Acids Res. 2007;35(12):3928-44. Epub 2007 May 30.
2.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
4.	Rhythmic serotonin N-acetyltransferase mRNA degradation is essential for the maintenance of its circadian oscillation.	Kim TD, etal., Mol Cell Biol. 2005 Apr;25(8):3232-46.
5.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
6.	The expression pattern of heterogeneous nuclear ribonucleoprotein R in rat retina.	Peng ZY, etal., Neurochem Res. 2009 Jun;34(6):1083-8. doi: 10.1007/s11064-008-9878-3. Epub 2008 Nov 18.
7.	GOA pipeline	RGD automated data pipeline
8.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
9.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
10.	Specific interaction of Smn, the spinal muscular atrophy determining gene product, with hnRNP-R and gry-rbp/hnRNP-Q: a role for Smn in RNA processing in motor axons?	Rossoll W, etal., Hum Mol Genet 2002 Jan 1;11(1):93-105.
11.	Smn, the spinal muscular atrophy-determining gene product, modulates axon growth and localization of beta-actin mRNA in growth cones of motoneurons.	Rossoll W, etal., J Cell Biol. 2003 Nov 24;163(4):801-12. Epub 2003 Nov 17.

Additional References at PubMed

PMID:9421497	PMID:10734137	PMID:11991638	PMID:12477932	PMID:17289661	PMID:18197392	PMID:22658674	PMID:22681889	PMID:25002582	PMID:28131823

Genomics

Comparative Map Data

Hnrnpr
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	153,826,482 - 153,872,272 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	5	153,826,692 - 153,858,344 (+)	Ensembl				GRCr8
mRatBN7.2	5	148,542,999 - 148,574,888 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	148,543,044 - 148,574,867 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	5	151,240,600 - 151,272,452 (+)	NCBI	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	153,014,891 - 153,046,743 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	152,996,900 - 153,028,752 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd	5	153,446,671 - 153,478,513 (+)	NCBI
Lyon_Normotensive	5	155,435,185 - 155,467,027 (+)	NCBI
Lyon_Hypertensive	5	154,612,255 - 154,644,105 (+)	NCBI
F344_StmMcwi	5	148,183,142 - 148,214,985 (+)	NCBI
Rnor_6.0	5	154,668,194 - 154,699,967 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	154,668,179 - 154,699,966 (+)	Ensembl		Rnor_6.0 Ensembl	rn6	Rnor6.0
Rnor_5.0	5	158,435,433 - 158,467,206 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	5	155,053,567 - 155,086,482 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	5	146,943,785 - 146,975,518 (+)	NCBI		Celera
RGSC_v3.1	5	155,063,605 - 155,096,519 (+)	NCBI
Cytogenetic Map	5	q36	NCBI

HNRNPR
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	23,304,688 - 23,344,284 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	23,303,771 - 23,344,658 (-)	Ensembl		GRCh38.p14 Ensembl	hg38	GRCh38
GRCh37	1	23,631,181 - 23,670,777 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	23,508,863 - 23,543,440 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	1	23,381,581 - 23,416,090	NCBI
Celera	1	21,965,908 - 22,000,508 (-)	NCBI		Celera
Cytogenetic Map	1	p36.12	NCBI
HuRef	1	21,888,335 - 21,922,947 (-)	NCBI		HuRef
CHM1_1	1	23,748,964 - 23,783,552 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	1	23,137,824 - 23,177,454 (-)	NCBI		T2T-CHM13v2.0

Hnrnpr
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	136,038,230 - 136,086,758 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	136,038,247 - 136,086,758 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	4	136,310,942 - 136,345,981 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	136,310,942 - 136,359,447 (+)	Ensembl		GRCm38.p6 Ensembl	mm10	GRCm38
MGSCv37	4	135,866,891 - 135,896,593 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	4	135,583,048 - 135,612,754 (+)	NCBI		MGSCv36	mm8
Celera	4	134,504,233 - 134,541,867 (+)	NCBI		Celera
Cytogenetic Map	4	D3	NCBI
cM Map	4	68.4	NCBI

Hnrnpr
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955452	3,315,133 - 3,355,508 (-)	Ensembl		ChiLan1.0 Ensembl
ChiLan1.0	NW_004955452	3,318,536 - 3,354,725 (-)	NCBI	ChiLan1.0	ChiLan1.0

HNRNPR
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	203,596,951 - 203,631,217 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	202,699,926 - 202,734,209 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	22,501,816 - 22,536,050 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	23,491,310 - 23,536,807 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	23,491,310 - 23,521,977 (-)	Ensembl		PanPan1.1 Ensembl	panPan2	panpan1.1

HNRNPR
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	2	76,073,553 - 76,108,763 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	2	76,077,022 - 76,105,433 (+)	Ensembl		CanFam3.1 Ensembl	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	2	72,578,464 - 72,613,658 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	2	76,632,113 - 76,667,329 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	2	76,632,148 - 76,669,310 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	2	73,454,127 - 73,489,619 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	2	74,461,516 - 74,497,259 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	2	75,466,676 - 75,501,874 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Hnrnpr
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mIctTri1.hap1	11	15,463,429 - 15,499,722 (-)	NCBI		mIctTri1.hap1
HiC_Itri_2	NW_024405058	42,706,668 - 42,742,983 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936474	8,531,434 - 8,567,767 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936474	8,531,434 - 8,567,734 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

HNRNPR
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	81,196,062 - 81,239,406 (-)	Ensembl		Sscrofa11.1 Ensembl	susScr11	Sscrofa11.1
Sscrofa11.1	6	81,203,067 - 81,239,823 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	75,260,326 - 75,261,878 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

HNRNPR
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mChlSab1.0.hap1	20	113,725,562 - 113,759,445 (+)	NCBI		mChlSab1.0.hap1
Vero_WHO_p1.0	NW_023666033	6,963,189 - 6,997,405 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0
ChlSab1.1	20	109,325,850 - 109,357,624 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2

Hnrnpr
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624764	7,956,789 - 7,992,449 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2
HetGla_female_1.0 Ensembl	NW_004624764	7,957,395 - 7,992,398 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
Naked mole-rat maternal Ensembl	7	26,276,294 - 26,313,839 (+)	Ensembl

Hnrnpr
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	1	21,891,008 - 21,923,276 (-)	NCBI	Rrattus_CSIRO_v1	Rrattus_CSIRO_v1

Variants

Variants in Hnrnpr
397 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	473
Count of miRNA genes:	232
Interacting mature miRNAs:	286
Transcripts:	ENSRNOT00000015971
Prediction methods:	Microtar, Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
10053720	Scort26	Serum corticosterone level QTL 26	2.06	0.0147	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	5	130249266	172190305	Rat
1549845	Scl44	Serum cholesterol level QTL 44	6		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	5	44924861	153890773	Rat
8552960	Pigfal15	Plasma insulin-like growth factor 1 level QTL 15			blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	5	116702075	161702075	Rat
1354583	Despr3	Despair related QTL3	4.98	0.0002	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	5	132930505	172190305	Rat
61444	Strs2	Sensitivity to stroke QTL 2	4.7		cerebrum integrity trait (VT:0010549)	post-insult time to onset of cerebrovascular lesion (CMO:0002343)	5	141212838	172190305	Rat
1300119	Bp180	Blood pressure QTL 180	3.82		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	5	149642129	171146538	Rat
61452	Ciaa5	CIA Autoantibody QTL 5	3.5		blood autoantibody amount (VT:0003725)	calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)	5	99905133	172190305	Rat
70156	Niddm30	Non-insulin dependent diabetes mellitus QTL 30	3.98		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	5	134369218	156289444	Rat
8552908	Pigfal4	Plasma insulin-like growth factor 1 level QTL 4	6.6		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	5	133789363	172190305	Rat
1331803	Rf32	Renal function QTL 32	2.798		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal vascular resistance (CMO:0001900)	5	134369199	172190305	Rat
61393	Bp7	Blood pressure QTL 7	4.5	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	65089051	166764498	Rat
7794791	Mcs33	Mammary carcinoma susceptibility QTL 33	1.93		mammary gland integrity trait (VT:0010552)	mammary tumor incidence/prevalence measurement (CMO:0000946)	5	136631198	172190305	Rat
7207486	Bss109	Bone structure and strength QTL 109			femur strength trait (VT:0010010)	femur total energy absorbed before break (CMO:0001677)	5	112142946	157142946	Rat
7207481	Bss106	Bone structure and strength QTL 106	7.9		femur strength trait (VT:0010010)	femur ultimate force (CMO:0001675)	5	112142946	157142946	Rat
1302790	Scl20	Serum cholesterol level QTL 20	6.4	0.0001	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	110770739	155770739	Rat
1598861	Cm64	Cardiac mass QTL 64	2.9		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	5	133081618	172190305	Rat
1578766	Tcas11	Tongue tumor susceptibility QTL 11	4.12		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	5	51657967	166600247	Rat
631263	Cm24	Cardiac mass QTL 24	3.5		heart mass (VT:0007028)	heart left ventricle weight to body weight ratio (CMO:0000530)	5	149805999	162987697	Rat
631505	Bp103	Blood pressure QTL 103	3.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	138002522	170842766	Rat
1549838	Bss4	Bone structure and strength QTL 4	9.2		femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	5	112142946	157142946	Rat
1581505	Rf54	Renal function QTL 54			kidney physiology trait (VT:0002136)	kidney 20-HETE level (CMO:0001854)	5	133270647	172190305	Rat
2317753	Glom24	Glomerulus QTL 24	3.1		kidney glomerulus integrity trait (VT:0010546)	kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)	5	141764300	172190305	Rat
8694169	Bw148	Body weight QTL 148	5	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	5	133789363	172190305	Rat
1331721	Bp210	Blood pressure QTL 210	3.413		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	5	148093485	172129029	Rat
1581510	Cm54	Cardiac mass QTL 54	3.4	0.05	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	5	125969677	172190305	Rat
1576312	Emca8	Estrogen-induced mammary cancer QTL 8	4.1		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	55124766	172190305	Rat
2317056	Wbc3	White blood cell count QTL 3	2.51	0.01	leukocyte quantity (VT:0000217)	white blood cell count (CMO:0000027)	5	111236572	156236572	Rat
724525	Bp147	Blood pressure QTL 147	4.3	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	131708216	172190305	Rat
1598847	Cm62	Cardiac mass QTL 62	3.4		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	5	114131300	159131300	Rat
2293642	Bss37	Bone structure and strength QTL 37	4.64	0.0001	femur strength trait (VT:0010010)	femur ultimate force (CMO:0001675)	5	125969677	156302135	Rat
2313096	Bmd78	Bone mineral density QTL 78	3.1	0.0001	tibia mineral mass (VT:1000283)	total volumetric bone mineral density (CMO:0001728)	5	149661912	166600247	Rat
7207488	Bss110	Bone structure and strength QTL 1	8.4		femur strength trait (VT:0010010)	femur stiffness (CMO:0001674)	5	112142946	157142946	Rat
8694441	Bw169	Body weight QTL 169	17.61	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	5	116702075	161702075	Rat
7207491	Bss112	Bone structure and strength QTL 112	7		femur morphology trait (VT:0000559)	femur midshaft cortical cross-sectional area (CMO:0001663)	5	112142946	157142946	Rat
8694389	Bw160	Body weight QTL 160	6.17	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	5	116702075	161702075	Rat
1354598	Srn6	Serum renin concentration QTL 6	3.8		blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	5	74335621	156302135	Rat
8694198	Abfw3	Abdominal fat weight QTL 3	16.13	0.001	visceral adipose mass (VT:0010063)	abdominal fat pad weight to body weight ratio (CMO:0000095)	5	116702075	161702075	Rat
1298089	Scl14	Serum cholesterol level QTL 14	5.8	0.0004	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	114131300	159131300	Rat
1598819	Bp292	Blood pressure QTL 292	4.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	133081618	172190305	Rat
1358187	Emca1	Estrogen-induced mammary cancer QTL 1	4.4		mammary gland integrity trait (VT:0010552)	post-insult time to mammary tumor formation (CMO:0000345)	5	104262817	153890625	Rat

Markers in Region

D5Rat57

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	5	153,890,625 - 153,890,773 (+)	Marker Load Pipeline
mRatBN7.2	5	148,607,142 - 148,607,290 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	154,732,228 - 154,732,375	NCBI	Rnor6.0
Rnor_5.0	5	158,498,929 - 158,499,076	UniSTS	Rnor5.0
RGSC_v3.4	5	155,120,876 - 155,121,024	RGD	RGSC3.4
RGSC_v3.4	5	155,120,877 - 155,121,024	UniSTS	RGSC3.4
Celera	5	147,007,863 - 147,007,992	UniSTS
RGSC_v3.1	5	155,130,916 - 155,131,063	RGD
RH 3.4 Map	5	1003.2	UniSTS
RH 3.4 Map	5	1003.2	RGD
RH 2.0 Map	5	955.5	RGD
FHH x ACI Map	5	84.2699	RGD
Cytogenetic Map	5	q36	UniSTS

BF390061

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	148,582,708 - 148,582,902 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	154,707,804 - 154,707,997	NCBI	Rnor6.0
Rnor_5.0	5	158,475,043 - 158,475,236	UniSTS	Rnor5.0
RGSC_v3.4	5	155,094,320 - 155,094,513	UniSTS	RGSC3.4
Celera	5	146,983,356 - 146,983,549	UniSTS
RH 3.4 Map	5	1003.5	UniSTS
Cytogenetic Map	5	q36	UniSTS

UniSTS:479130

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	204,419,595 - 204,420,133 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	222,484,117 - 222,484,654	NCBI	Rnor6.0
Rnor_5.0	1	229,474,204 - 229,474,741	UniSTS	Rnor5.0
RGSC_v3.4	1	209,904,231 - 209,904,768	UniSTS	RGSC3.4
Celera	1	201,951,722 - 201,952,259	UniSTS
Cytogenetic Map	1	q43	UniSTS
Cytogenetic Map	5	q36	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

adipose tissue	alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	entire extraembryonic component	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	pharyngeal arch	renal system	reproductive system	respiratory system	sensory system	visual system
276	156	730	1591	4062	1009	1724	133	872	495	854	156	5395	2597	449	3975	38	1393	741	907	160	158

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_175603	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039110146	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063287850	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063287851	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063287852	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063287853	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063287854	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063287855	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063287856	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063287857	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063287858	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063287859	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063287860	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063287861	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063287862	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063287863	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010066404	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010066405	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AY184814	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC093598	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473968	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000015971 ⟹ ENSRNOP00000015971

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	153,826,692 - 153,858,344 (+)	Ensembl
mRatBN7.2 Ensembl	5	148,543,044 - 148,574,867 (+)	Ensembl
Rnor_6.0 Ensembl	5	154,668,179 - 154,699,966 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000112913 ⟹ ENSRNOP00000091882

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	153,829,709 - 153,857,704 (+)	Ensembl
mRatBN7.2 Ensembl	5	148,546,226 - 148,574,223 (+)	Ensembl

RefSeq Acc Id:

NM_175603 ⟹ NP_783193

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	153,826,519 - 153,858,369 (+)	NCBI
mRatBN7.2	5	148,543,036 - 148,574,888 (+)	NCBI
Dahl_SR_JrHsd	5	153,446,671 - 153,478,513 (+)	NCBI
Lyon_Normotensive	5	155,435,185 - 155,467,027 (+)	NCBI
Lyon_Hypertensive	5	154,612,255 - 154,644,105 (+)	NCBI
F344_StmMcwi	5	148,183,142 - 148,214,985 (+)	NCBI
Rnor_6.0	5	154,668,194 - 154,699,967 (+)	NCBI
Rnor_5.0	5	158,435,433 - 158,467,206 (+)	NCBI
RGSC_v3.4	5	155,053,567 - 155,086,482 (+)	RGD
Celera	5	146,943,785 - 146,975,518 (+)	RGD

Sequence:

show sequence

CCGCCCTTTTTTTTTTTTTTCAAAGCGCCTCGCGCTGATTCTCACGGGCCAGGCTGCCGGCCCC
CCGCTCTGCCCTGCATAATAAAATGGCTAATCAGGTGAATGGTAATGCGGTACAGTTAAAAGAA
GAGGAGGAGCCAATGGACACTTCCAGTGTTACTCACACAGAGCACTACAAGACACTGGTAGAGG
CAGGCCTCCCACAGAAGGTGGCAGAGAGACTTGATGAAATATTTCAGACAGGGTTGGTAGCTTA
TGTCGATCTTGATGAAAGAGCAATCGATGCTCTCAGGGAATTTAATGAAGAAGGAGCTCTGTCT
GTGCTGCAGCAGTTCAAAGAGAGCGACTTATCCCATGTTCAGAACAAAAGTGCATTTTTATGTG
GAGTTATGAAGACCTACAGGCAAAGAGAGAAACAAGGCAGCAAGGTACAAGAGTCCACGAAAGG
GCCTGATGAAGCAAAGATCAAGGCCTTGCTCGAGAGGACTGGTTATACTTTGGATGTAACCACA
GGACAGAGGAAGTATGGTGGGCCTCCACCAGACAGTGTGTACTCAGGTGTGCAACCAGGAATTG
GAACAGAGGTCTTTGTAGGTAAAATTCCAAGAGACTTGTATGAGGATGAGTTGGTGCCCCTTTT
TGAGAAGGCTGGTCCTATCTGGGATCTACGCCTCATGATGGATCCACTTTCTGGTCAGAACAGA
GGCTATGCGTTTATCACCTTCTGTGGAAAGGAAGCCGCCCAGGAAGCAGTTAAACTGTGTGACA
GCTATGAGATTCGCCCTGGTAAACACCTGGGAGTGTGCATTTCTGTGGCAAACAACAGACTTTT
TGTTGGATCCATTCCAAAGAATAAAACTAAAGAGAATATTCTGGAAGAGTTCAGTAAAGTCACA
GAGGGTTTGGTGGACGTTATTCTCTATCATCAACCCGATGACAAAAAGAAGAATCGGGGGTTCT
GCTTCCTTGAATATGAGGATCACAAGTCAGCAGCACAAGCCAGACGCCGGCTGATGAGTGGAAA
AGTCAAAGTGTGGGGAAATGTAGTTACAGTTGAGTGGGCTGACCCCGTGGAAGAACCGGATCCG
GAAGTCATGGCAAAGGTAAAAGTTTTATTTGTGAGAAACCTGGCTACTACAGTGACAGAAGAAA
TACTAGAAAAGTCATTCTCTGAATTTGGAAAACTGGAGAGAGTGAAGAAGTTGAAAGATTATGC
ATTTGTTCATTTTGAAGACAGAGGAGCTGCTGTTAAGGCTATGGATGAAATGAATGGAAAAGAA
ATAGAAGGGGAAGAAATTGAAATTGTCTTAGCTAAGCCACCAGACAAGAAAAGGAAAGAGCGCC
AAGCTGCTAGACAGGCCTCCAGAAGCACTGCGTATGAAGATTATTATTATCACCCTCCTCCCCG
AATGCCGCCTCCAATGAGAGGTCGAGGTCGCGGAGGGAGAGGTGGATATGGCTACCCTCCAGAT
TACTATGGTTATGAAGACTACTATGATGATTACTATGGTTATGATTATCACGACTACCGTGGAG
GCTATGAAGATCCCTACTACGGCTATGATGATGGCTATGCAGTAAGAGGAAGAGGAGGAGGAAG
GGGGGGGCGAGGTGCTCCACCACCACCAAGGGGGCGGGGAGCACCACCTCCAAGAGGTAGAGCT
GGCTATTCACAGAGGGGGGCACCTTTGGGACCACCAAGAGGCTCAAGGGGTGGCAGAGGGGGTC
CTGCACAACAGCAGAGAGGCCGTGGTTCTCGTGGAGCTCGGGGCAATCGAGGGGGCAATGTAGG
AGGCAAGAGAAAGGCAGATGGGTACAACCAGCCTGATTCCAAACGTCGTCAGACCAACAACCAA
CAGAACTGGGGTTCCCAACCCATCGCTCAGCAGCCGCTTCAGCAAGGTGGTGACTATTCTGGTA
ACTATGGTTACAATAATGACAACCAAGAATTTTATCAGGATACTTATGGGCAACAGTGGAAATA
GACAAGTGAGGGCTTGTAAACGATTCTGTCAAGATCCGATTGGCTCTAGATCTACATTCTTCAA
ACAAAATTGGCGTAACTGTTTCATCTTTAAGTAGCAGTTTGCTGCCATTTGTATTCAGCTGAGG
AAGTCACTCTTGTGTATATTCTCAAGGCTTCTTATTTTTCTTCTTTTCTAAATGCTCTCGGACA
TTACTGGGCTTGCAGAGGTCCCTTATTCTGGGGTCACAATGCTTTTACCGTTCCAAGCTTCATC
CTAGCTTCAGAACAAACTGTAAATCATGATTTTGCAGAGCCTTTGGTTTGGACAGTTCTGTGTT
TTGGATGTGGAATAGATTACATAGGAGTATGACGTATGCTGTAAATAAAAGTACAACAGTACTT
TGTCTCAGTACTTTTAAGGAATTAAAGCAAACAGACTTAAGTTTCCTTGTATTGAAAATAACCT
ATGACTGTATGTTTTGCATTCCTAGAAGCAGGTTAACTGTGTTTTTAAATTGTTATAACCACAC
CTTTTTGAAATCTGCCCTACAAAATTTGTTTGGCTTAAACGTCAAAGCCGTGACAATTTGTTCT
TTGATGTGATTGTATTTCCAATTTCTTGTTCATGTAAGATTTCAATAAAACTCAAAAATCTATT
CAAAACATCAAAAAAAAAAAAAAAAAAAAAAAAAAAGG

hide sequence

RefSeq Acc Id:

XM_039110146 ⟹ XP_038966074

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	153,826,580 - 153,872,272 (+)	NCBI
mRatBN7.2	5	148,542,999 - 148,574,888 (+)	NCBI

RefSeq Acc Id:

XM_063287850 ⟹ XP_063143920

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	153,826,482 - 153,872,272 (+)	NCBI

RefSeq Acc Id:

XM_063287851 ⟹ XP_063143921

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	153,826,689 - 153,872,272 (+)	NCBI

RefSeq Acc Id:

XM_063287852 ⟹ XP_063143922

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	153,827,146 - 153,872,272 (+)	NCBI

RefSeq Acc Id:

XM_063287853 ⟹ XP_063143923

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	153,827,153 - 153,872,272 (+)	NCBI

RefSeq Acc Id:

XM_063287854 ⟹ XP_063143924

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	153,826,528 - 153,872,272 (+)	NCBI

RefSeq Acc Id:

XM_063287855 ⟹ XP_063143925

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	153,826,720 - 153,872,272 (+)	NCBI

RefSeq Acc Id:

XM_063287856 ⟹ XP_063143926

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	153,826,741 - 153,872,272 (+)	NCBI

RefSeq Acc Id:

XM_063287857 ⟹ XP_063143927

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	153,826,482 - 153,872,272 (+)	NCBI

RefSeq Acc Id:

XM_063287858 ⟹ XP_063143928

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	153,826,482 - 153,872,272 (+)	NCBI

RefSeq Acc Id:

XM_063287859 ⟹ XP_063143929

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	153,826,484 - 153,872,272 (+)	NCBI

RefSeq Acc Id:

XM_063287860 ⟹ XP_063143930

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	153,827,149 - 153,872,272 (+)	NCBI

RefSeq Acc Id:

XM_063287861 ⟹ XP_063143931

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	153,826,482 - 153,872,272 (+)	NCBI

RefSeq Acc Id:

XM_063287862 ⟹ XP_063143932

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	153,826,605 - 153,872,272 (+)	NCBI

RefSeq Acc Id:

XM_063287863 ⟹ XP_063143933

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	153,826,482 - 153,848,968 (+)	NCBI

RefSeq Acc Id:

XR_010066404

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	153,826,482 - 153,856,879 (+)	NCBI

RefSeq Acc Id:

XR_010066405

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	153,826,482 - 153,853,790 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_783193	(Get FASTA)	NCBI Sequence Viewer
	XP_038966074	(Get FASTA)	NCBI Sequence Viewer
	XP_063143920	(Get FASTA)	NCBI Sequence Viewer
	XP_063143921	(Get FASTA)	NCBI Sequence Viewer
	XP_063143922	(Get FASTA)	NCBI Sequence Viewer
	XP_063143923	(Get FASTA)	NCBI Sequence Viewer
	XP_063143924	(Get FASTA)	NCBI Sequence Viewer
	XP_063143925	(Get FASTA)	NCBI Sequence Viewer
	XP_063143926	(Get FASTA)	NCBI Sequence Viewer
	XP_063143927	(Get FASTA)	NCBI Sequence Viewer
	XP_063143928	(Get FASTA)	NCBI Sequence Viewer
	XP_063143929	(Get FASTA)	NCBI Sequence Viewer
	XP_063143930	(Get FASTA)	NCBI Sequence Viewer
	XP_063143931	(Get FASTA)	NCBI Sequence Viewer
	XP_063143932	(Get FASTA)	NCBI Sequence Viewer
	XP_063143933	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH93598	(Get FASTA)	NCBI Sequence Viewer
	AAO24773	(Get FASTA)	NCBI Sequence Viewer
	EDL80810	(Get FASTA)	NCBI Sequence Viewer
	EDL80811	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000015971
	ENSRNOP00000015971.6
	ENSRNOP00000080671.2
	ENSRNOP00000091882.1

RefSeq Acc Id:

NP_783193 ⟸ NM_175603

- UniProtKB:

Q566E4 (UniProtKB/TrEMBL), F1LUZ6 (UniProtKB/TrEMBL), Q811S1 (UniProtKB/TrEMBL), A0ACM8Q799 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MANQVNGNAVQLKEEEEPMDTSSVTHTEHYKTLVEAGLPQKVAERLDEIFQTGLVAYVDLDERA
IDALREFNEEGALSVLQQFKESDLSHVQNKSAFLCGVMKTYRQREKQGSKVQESTKGPDEAKIK
ALLERTGYTLDVTTGQRKYGGPPPDSVYSGVQPGIGTEVFVGKIPRDLYEDELVPLFEKAGPIW
DLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKN
KTKENILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNV
VTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYAFVHFEDR
GAAVKAMDEMNGKEIEGEEIEIVLAKPPDKKRKERQAARQASRSTAYEDYYYHPPPRMPPPMRG
RGRGGRGGYGYPPDYYGYEDYYDDYYGYDYHDYRGGYEDPYYGYDDGYAVRGRGGGRGGRGAPP
PPRGRGAPPPRGRAGYSQRGAPLGPPRGSRGGRGGPAQQQRGRGSRGARGNRGGNVGGKRKADG
YNQPDSKRRQTNNQQNWGSQPIAQQPLQQGGDYSGNYGYNNDNQEFYQDTYGQQWK

hide sequence

Ensembl Acc Id:

ENSRNOP00000015971 ⟸ ENSRNOT00000015971

RefSeq Acc Id:	XP_038966074 ⟸ XM_039110146
- Peptide Label:	isoform X7
- UniProtKB:	A0A8I5ZQ92 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000091882 ⟸ ENSRNOT00000112913

RefSeq Acc Id:	XP_063143920 ⟸ XM_063287850
- Peptide Label:	isoform X1
- UniProtKB:	Q811S1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063143931 ⟸ XM_063287861
- Peptide Label:	isoform X6
- UniProtKB:	Q811S1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063143928 ⟸ XM_063287858
- Peptide Label:	isoform X4
- UniProtKB:	Q811S1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063143927 ⟸ XM_063287857
- Peptide Label:	isoform X3
- UniProtKB:	Q811S1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063143933 ⟸ XM_063287863
- Peptide Label:	isoform X8

RefSeq Acc Id:	XP_063143929 ⟸ XM_063287859
- Peptide Label:	isoform X5
- UniProtKB:	A0A8I5ZQ92 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063143924 ⟸ XM_063287854
- Peptide Label:	isoform X2
- UniProtKB:	F1LUZ6 (UniProtKB/TrEMBL), Q566E4 (UniProtKB/TrEMBL), A0ACM8Q799 (UniProtKB/TrEMBL), Q811S1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063143932 ⟸ XM_063287862
- Peptide Label:	isoform X1
- UniProtKB:	Q811S1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063143921 ⟸ XM_063287851
- Peptide Label:	isoform X1
- UniProtKB:	Q811S1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063143925 ⟸ XM_063287855
- Peptide Label:	isoform X2
- UniProtKB:	F1LUZ6 (UniProtKB/TrEMBL), Q566E4 (UniProtKB/TrEMBL), A0ACM8Q799 (UniProtKB/TrEMBL), Q811S1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063143926 ⟸ XM_063287856
- Peptide Label:	isoform X2
- UniProtKB:	F1LUZ6 (UniProtKB/TrEMBL), Q566E4 (UniProtKB/TrEMBL), A0ACM8Q799 (UniProtKB/TrEMBL), Q811S1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063143922 ⟸ XM_063287852
- Peptide Label:	isoform X1
- UniProtKB:	Q811S1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063143930 ⟸ XM_063287860
- Peptide Label:	isoform X5
- UniProtKB:	A0A8I5ZQ92 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063143923 ⟸ XM_063287853
- Peptide Label:	isoform X1
- UniProtKB:	Q811S1 (UniProtKB/TrEMBL)

Protein Domains

RRM

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q566E4-F1-model_v2	AlphaFold	Q566E4	1-632	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13694170

Promoter ID:

EPDNEW_R4695

Type:

initiation region

Name:

Hnrnpr_1

Description:

heterogeneous nuclear ribonucleoprotein R

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	5	154,668,142 - 154,668,202	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:631348	AgrOrtholog
BioCyc Gene	G2FUF-39505	BioCyc
Ensembl Genes	ENSRNOG00000011910	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
	ENSRNOG00000048337	UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000015971	ENTREZGENE
	ENSRNOT00000015971.9	UniProtKB/TrEMBL
	ENSRNOT00000071413.4	UniProtKB/TrEMBL
	ENSRNOT00000112913.2	UniProtKB/TrEMBL
Gene3D-CATH	3.30.70.330	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7315896	IMAGE-MGC_LOAD
InterPro	hnRNP_Q_AcD	UniProtKB/TrEMBL
	HnRNP_R/Q_splicing_fac	UniProtKB/TrEMBL
	hnRNPR_RRM1	UniProtKB/TrEMBL
	hnRNPR_RRM2	UniProtKB/TrEMBL
	Nucleotide-bd_a/b_plait_sf	UniProtKB/TrEMBL
	RBD_domain_sf	UniProtKB/TrEMBL
	RRM_dom	UniProtKB/TrEMBL
KEGG Report	rno:319110	UniProtKB/TrEMBL
MGC_CLONE	MGC:105294	IMAGE-MGC_LOAD
NCBI Gene	319110	ENTREZGENE
PANTHER	HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN	UniProtKB/TrEMBL
Pfam	hnRNP_Q_AcD	UniProtKB/TrEMBL
	RRM_1	UniProtKB/TrEMBL
PhenoGen	Hnrnpr	PhenoGen
PROSITE	RRM	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000011910	RatGTEx
	ENSRNOG00000048337	RatGTEx
SMART	RRM	UniProtKB/TrEMBL
Superfamily-SCOP	SSF54928	UniProtKB/TrEMBL
UniProt	A0A8I5ZQ92	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6GJB1_RAT	UniProtKB/TrEMBL
	A0ACM8Q799	ENTREZGENE, UniProtKB/TrEMBL
	F1LUZ6	ENTREZGENE
	Q566E4	ENTREZGENE, UniProtKB/TrEMBL
	Q811S1	ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary	F1LUZ6	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-02-25	Hnrnpr	heterogeneous nuclear ribonucleoprotein R	Hnrpr	heterogeneous nuclear ribonucleoprotein R	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2004-02-11	Hnrpr	heterogeneous nuclear ribonucleoprotein R			Symbol and Name status set to approved	625702	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

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Imported Disease Annotations - ClinVar

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RGD Manual Annotations