Rhd (Rh blood group, D antigen) - Rat Genome Database

Send us a Message



Rat Genome Database
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Grant Resources Citing RGD About Us Contact Us
Search by Genomic Position Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quantitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Behavioral & Substance Use Disorder Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Rhd (Rh blood group, D antigen) Rattus norvegicus
Analyze
Symbol: Rhd
Name: Rh blood group, D antigen
RGD ID: 620451
Description: Predicted to enable ammonium channel activity. Predicted to be involved in ammonium homeostasis and ammonium transmembrane transport. Predicted to act upstream of or within erythrocyte development and multicellular organismal-level iron ion homeostasis. Predicted to be located in membrane. Predicted to be active in plasma membrane. Human ortholog(s) of this gene implicated in Rh isoimmunization. Orthologous to several human genes including RHD (Rh blood group D antigen); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: blood group Rh(D) polypeptide; erythrocyte membrane glycoprotein Rh30; Rh; Rhced; Rhesus blood group; Rhesus blood group CE and D
RGD Orthologs
Human
Mouse
Chinchilla
Squirrel
Pig
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85152,371,160 - 152,405,396 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl5152,371,200 - 152,405,395 (+)EnsemblGRCr8
mRatBN7.25147,087,479 - 147,121,716 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5147,087,518 - 147,121,715 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx5149,787,972 - 149,822,120 (+)NCBIUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05151,559,663 - 151,593,867 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05151,544,211 - 151,578,366 (+)NCBIUTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd5151,995,232 - 152,029,441 (+)NCBI
Lyon_Normotensive5153,985,053 - 154,019,259 (+)NCBI
Lyon_Hypertensive5153,160,172 - 153,194,387 (+)NCBI
F344_StmMcwi5146,732,006 - 146,766,204 (+)NCBI
Rnor_6.05153,197,416 - 153,232,009 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5153,197,459 - 153,232,687 (+)EnsemblRnor_6.0 Ensemblrn6Rnor6.0
Rnor_5.05156,970,991 - 157,004,413 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.45153,638,642 - 153,672,532 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera5145,499,647 - 145,531,806 (+)NCBICelera
RGSC_v3.15153,648,680 - 153,682,570 (+)NCBI
Cytogenetic Map5q36NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
ankyrin-1 complex  (ISO)
membrane  (IEA,ISO)
plasma membrane  (IBA,IEA,ISS)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Conserved evolution of the Rh50 gene compared to its homologous Rh blood group gene. Kitano T, etal., Biochem Biophys Res Commun 1998 Aug 10;249(1):78-85.
4. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
5. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
6. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
7. GOA pipeline RGD automated data pipeline
8. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
9. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10329015   PMID:12477932   PMID:16227429   PMID:19807729  


Genomics

Comparative Map Data
Rhd
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85152,371,160 - 152,405,396 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl5152,371,200 - 152,405,395 (+)EnsemblGRCr8
mRatBN7.25147,087,479 - 147,121,716 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5147,087,518 - 147,121,715 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx5149,787,972 - 149,822,120 (+)NCBIUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05151,559,663 - 151,593,867 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05151,544,211 - 151,578,366 (+)NCBIUTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd5151,995,232 - 152,029,441 (+)NCBI
Lyon_Normotensive5153,985,053 - 154,019,259 (+)NCBI
Lyon_Hypertensive5153,160,172 - 153,194,387 (+)NCBI
F344_StmMcwi5146,732,006 - 146,766,204 (+)NCBI
Rnor_6.05153,197,416 - 153,232,009 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5153,197,459 - 153,232,687 (+)EnsemblRnor_6.0 Ensemblrn6Rnor6.0
Rnor_5.05156,970,991 - 157,004,413 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.45153,638,642 - 153,672,532 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera5145,499,647 - 145,531,806 (+)NCBICelera
RGSC_v3.15153,648,680 - 153,682,570 (+)NCBI
Cytogenetic Map5q36NCBI
RHCE
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38125,362,249 - 25,430,203 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl125,362,249 - 25,430,192 (-)EnsemblGRCh38.p14 Ensemblhg38GRCh38
GRCh37125,688,740 - 25,747,426 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36125,561,327 - 25,619,950 (-)NCBIBuild 36Build 36hg18NCBI36
Celera124,144,959 - 24,145,192 (-)NCBICelera
Celera123,955,013 - 23,984,891 (+)NCBICelera
Cytogenetic Map1p36.11NCBI
HuRef123,942,704 - 24,004,325 (-)NCBIHuRef
CHM1_1125,802,838 - 25,860,779 (-)NCBICHM1_1
T2T-CHM13v2.0125,198,547 - 25,266,530 (-)NCBIT2T-CHM13v2.0
Rhd
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394134,591,875 - 134,623,483 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4134,591,845 - 134,623,487 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm384134,864,536 - 134,896,172 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4134,864,536 - 134,896,172 (+)EnsemblGRCm38.p6 Ensemblmm10GRCm38
MGSCv374134,420,451 - 134,452,087 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv364134,136,660 - 134,168,248 (+)NCBIMGSCv36mm8
Celera4133,047,374 - 133,079,022 (+)NCBICelera
Cytogenetic Map4D3NCBI
cM Map467.13NCBI
Rhce
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554524,913,078 - 4,956,204 (-)EnsemblChiLan1.0 Ensembl
ChiLan1.0NW_0049554524,912,882 - 4,956,174 (-)NCBIChiLan1.0ChiLan1.0
Rhce
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mIctTri1.hap11116,972,261 - 16,996,674 (-)NCBImIctTri1.hap1
HiC_Itri_2NW_02440505844,212,246 - 44,249,616 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647410,041,431 - 10,074,332 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493647410,036,478 - 10,074,332 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RHCE
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl682,880,584 - 82,925,305 (-)EnsemblSscrofa11.1 EnsemblsusScr11Sscrofa11.1
Sscrofa11.1682,880,585 - 82,925,238 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Pig Cytomap6q22-q23NCBI
Rhce
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247649,516,053 - 9,556,628 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Naked mole-rat maternal Ensembl724,713,892 - 24,755,715 (+)Ensembl
Rhce
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1123,346,891 - 23,380,665 (-)NCBIRrattus_CSIRO_v1Rrattus_CSIRO_v1

Variants

.
Variants in Rhd
303 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:18
Count of miRNA genes:16
Interacting mature miRNAs:18
Transcripts:ENSRNOT00000023187
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1331796Thshl2Thyroid stimulating hormone level QTL 22.3blood thyroid-stimulating hormone amount (VT:0005119)serum thyroid stimulating hormone level (CMO:0001248)5102105698152749382Rat
10053720Scort26Serum corticosterone level QTL 262.060.0147blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)5130249266172190305Rat
1549845Scl44Serum cholesterol level QTL 446blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)544924861153890773Rat
8552960Pigfal15Plasma insulin-like growth factor 1 level QTL 15blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)5116702075161702075Rat
1354583Despr3Despair related QTL34.980.0002locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)5132930505172190305Rat
61444Strs2Sensitivity to stroke QTL 24.7cerebrum integrity trait (VT:0010549)post-insult time to onset of cerebrovascular lesion (CMO:0002343)5141212838172190305Rat
1300119Bp180Blood pressure QTL 1803.82arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)5149642129171146538Rat
61452Ciaa5CIA Autoantibody QTL 53.5blood autoantibody amount (VT:0003725)calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)599905133172190305Rat
70156Niddm30Non-insulin dependent diabetes mellitus QTL 303.98blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)5134369218156289444Rat
8552908Pigfal4Plasma insulin-like growth factor 1 level QTL 46.6blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)5133789363172190305Rat
1331803Rf32Renal function QTL 322.798kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)5134369199172190305Rat
61393Bp7Blood pressure QTL 74.50.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)565089051166764498Rat
7794791Mcs33Mammary carcinoma susceptibility QTL 331.93mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)5136631198172190305Rat
7207486Bss109Bone structure and strength QTL 109femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)5112142946157142946Rat
7207481Bss106Bone structure and strength QTL 1067.9femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)5112142946157142946Rat
1302790Scl20Serum cholesterol level QTL 206.40.0001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)5110770739155770739Rat
1598861Cm64Cardiac mass QTL 642.9heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)5133081618172190305Rat
1578766Tcas11Tongue tumor susceptibility QTL 114.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)551657967166600247Rat
631263Cm24Cardiac mass QTL 243.5heart mass (VT:0007028)heart left ventricle weight to body weight ratio (CMO:0000530)5149805999162987697Rat
631505Bp103Blood pressure QTL 1033.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5138002522170842766Rat
1549838Bss4Bone structure and strength QTL 49.2femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)5112142946157142946Rat
1581505Rf54Renal function QTL 54kidney physiology trait (VT:0002136)kidney 20-HETE level (CMO:0001854)5133270647172190305Rat
2317753Glom24Glomerulus QTL 243.1kidney glomerulus integrity trait (VT:0010546)kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)5141764300172190305Rat
8694169Bw148Body weight QTL 14850.001body mass (VT:0001259)body weight gain (CMO:0000420)5133789363172190305Rat
1331721Bp210Blood pressure QTL 2103.413arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)5148093485172129029Rat
1581510Cm54Cardiac mass QTL 543.40.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)5125969677172190305Rat
1576312Emca8Estrogen-induced mammary cancer QTL 84.1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)555124766172190305Rat
2317056Wbc3White blood cell count QTL 32.510.01leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)5111236572156236572Rat
724525Bp147Blood pressure QTL 1474.30.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5131708216172190305Rat
1598847Cm62Cardiac mass QTL 623.4heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)5114131300159131300Rat
2293642Bss37Bone structure and strength QTL 374.640.0001femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)5125969677156302135Rat
2313096Bmd78Bone mineral density QTL 783.10.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)5149661912166600247Rat
7207488Bss110Bone structure and strength QTL 18.4femur strength trait (VT:0010010)femur stiffness (CMO:0001674)5112142946157142946Rat
8694441Bw169Body weight QTL 16917.610.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)5116702075161702075Rat
7207491Bss112Bone structure and strength QTL 1127femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)5112142946157142946Rat
8694389Bw160Body weight QTL 1606.170.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)5116702075161702075Rat
1354598Srn6Serum renin concentration QTL 63.8blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)574335621156302135Rat
8694198Abfw3Abdominal fat weight QTL 316.130.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)5116702075161702075Rat
1298089Scl14Serum cholesterol level QTL 145.80.0004blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)5114131300159131300Rat
1598819Bp292Blood pressure QTL 2924.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5133081618172190305Rat
1358187Emca1Estrogen-induced mammary cancer QTL 14.4mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)5104262817153890625Rat


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
pharyngeal arch
renal system
reproductive system
respiratory system
sensory system
visual system
251 81 428 1324 3586 810 1516 121 668 490 657 114 4251 2245 436 3534 30 1090 673 890 102 101

Sequence


Ensembl Acc Id: ENSRNOT00000023187   ⟹   ENSRNOP00000023187
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl5152,371,200 - 152,405,395 (+)Ensembl
mRatBN7.2 Ensembl5147,087,518 - 147,121,715 (+)Ensembl
Rnor_6.0 Ensembl5153,197,459 - 153,232,687 (+)Ensembl
RefSeq Acc Id: NM_001429898   ⟹   NP_001416827
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Dahl_SR_JrHsd5151,995,232 - 152,029,441 (+)NCBI
Lyon_Normotensive5153,985,053 - 154,019,259 (+)NCBI
Lyon_Hypertensive5153,160,172 - 153,194,387 (+)NCBI
F344_StmMcwi5146,732,006 - 146,766,204 (+)NCBI
RefSeq Acc Id: NM_022505   ⟹   NP_071950
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85152,371,200 - 152,405,396 (+)NCBI
mRatBN7.25147,087,518 - 147,121,716 (+)NCBI
Dahl_SR_JrHsd5151,995,232 - 152,029,441 (+)NCBI
Lyon_Normotensive5153,985,053 - 154,019,259 (+)NCBI
Lyon_Hypertensive5153,160,172 - 153,194,387 (+)NCBI
F344_StmMcwi5146,732,006 - 146,766,204 (+)NCBI
Rnor_6.05153,197,450 - 153,232,009 (+)NCBI
Rnor_5.05156,970,991 - 157,004,413 (+)NCBI
RGSC_v3.45153,638,642 - 153,672,532 (+)RGD
Celera5145,499,647 - 145,531,806 (+)RGD
Sequence:
RefSeq Acc Id: XM_006239268   ⟹   XP_006239330
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85152,371,161 - 152,405,392 (+)NCBI
mRatBN7.25147,087,480 - 147,121,716 (+)NCBI
Rnor_6.05153,197,416 - 153,232,005 (+)NCBI
Rnor_5.05156,970,991 - 157,004,413 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039110697   ⟹   XP_038966625
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85152,371,161 - 152,405,392 (+)NCBI
mRatBN7.25147,087,481 - 147,121,716 (+)NCBI
RefSeq Acc Id: XR_010066465
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85152,371,160 - 152,403,480 (+)NCBI
RefSeq Acc Id: NP_071950   ⟸   NM_022505
- UniProtKB: O88298 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006239330   ⟸   XM_006239268
- Peptide Label: isoform X1
- Sequence:
Ensembl Acc Id: ENSRNOP00000023187   ⟸   ENSRNOT00000023187
RefSeq Acc Id: XP_038966625   ⟸   XM_039110697
- Peptide Label: isoform X2
RefSeq Acc Id: NP_001416827   ⟸   NM_001429898

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-O88298-F1-model_v2 AlphaFold O88298 1-422 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13694145
Promoter ID:EPDNEW_R4670
Type:single initiation site
Name:Rhd_1
Description:Rh blood group, D antigen
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.05153,197,454 - 153,197,514EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:620451 AgrOrtholog
BioCyc Gene G2FUF-39556 BioCyc
Ensembl Genes ENSRNOG00000017130 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOG00055025358 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000023187 ENTREZGENE
  ENSRNOT00000023187.7 UniProtKB/Swiss-Prot
  ENSRNOT00055043741 UniProtKB/Swiss-Prot
Gene3D-CATH 1.10.3430.10 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:8374048 IMAGE-MGC_LOAD
InterPro Ammonium/urea_transptr UniProtKB/Swiss-Prot
  NH4_transpt_AmtB-like_dom UniProtKB/Swiss-Prot
  RhesusRHD UniProtKB/Swiss-Prot
KEGG Report rno:60414 UniProtKB/Swiss-Prot
MGC_CLONE MGC:156556 IMAGE-MGC_LOAD
NCBI Gene 60414 ENTREZGENE
PANTHER AMMONIUM TRANSPORTER UniProtKB/Swiss-Prot
  BLOOD GROUP RH(CE) POLYPEPTIDE-RELATED UniProtKB/Swiss-Prot
Pfam Ammonium_transp UniProtKB/Swiss-Prot
PhenoGen Rhd PhenoGen
PRINTS RHESUSRHD UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000017130 RatGTEx
  ENSRNOG00055025358 RatGTEx
Superfamily-SCOP Ammonium transporter UniProtKB/Swiss-Prot
UniProt O88298 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-02-25 Rhd  Rh blood group, D antigen  Rhced  Rhesus blood group CE and D  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-01-20 Rhced  Rhesus blood group CE and D  Rh  Rhesus blood group  Symbol and Name updated 1299863 APPROVED
2002-08-07 Rh  Rhesus blood group      Symbol and Name status set to provisional 70820 PROVISIONAL