ZSWIM5P1 (zinc finger SWIM-type containing 5 pseudogene 1) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: ZSWIM5P1 (zinc finger SWIM-type containing 5 pseudogene 1) Homo sapiens
Analyze
Symbol: ZSWIM5P1
Name: zinc finger SWIM-type containing 5 pseudogene 1
RGD ID: 5688630
HGNC Page HGNC:43768
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Related Functional Gene: ZSWIM5  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381715,768,520 - 15,771,426 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1715,768,717 - 15,771,426 (-)EnsemblGRCh38hg38GRCh38
GRCh371715,671,834 - 15,674,740 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361715,612,756 - 15,615,485 (-)NCBINCBI36Build 36hg18NCBI36
Cytogenetic Map17p12NCBI
HuRef1715,546,434 - 15,549,139 (-)NCBIHuRef
CHM1_11715,680,822 - 15,683,527 (-)NCBICHM1_1
T2T-CHM13v2.01715,674,868 - 15,677,774 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:281
Count of miRNA genes:266
Interacting mature miRNAs:280
Transcripts:ENST00000420606
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium
Low 1 11 2
Below cutoff 225 308 164 25 120 15 406 220 383 6 406 144 10 107 282

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000420606
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1715,768,717 - 15,771,426 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC ZSWIM5P1 COSMIC
Ensembl Genes ENSG00000235430 Ensembl, ENTREZGENE
GTEx ENSG00000235430 GTEx
HGNC ID HGNC:43768 ENTREZGENE
Human Proteome Map ZSWIM5P1 Human Proteome Map
NCBI Gene ZSWIM5P1 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-02-18 ZSWIM5P1  zinc finger SWIM-type containing 5 pseudogene 1    zinc finger, SWIM-type containing 5 pseudogene 1  Symbol and/or name change 5135510 APPROVED