UBE2SP2 (ubiquitin conjugating enzyme E2 S pseudogene 2) - Rat Genome Database

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Gene: UBE2SP2 (ubiquitin conjugating enzyme E2 S pseudogene 2) Homo sapiens
Analyze
Symbol: UBE2SP2
Name: ubiquitin conjugating enzyme E2 S pseudogene 2
RGD ID: 5684197
HGNC Page HGNC:32196
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: ubiquitin conjugating enzyme E2S pseudogene 2
Related Functional Gene: UBE2S  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381718,677,261 - 18,677,912 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1718,677,261 - 18,677,757 (+)EnsemblGRCh38hg38GRCh38
GRCh371718,580,574 - 18,581,225 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map17p11.2NCBI
CHM1_11718,589,969 - 18,590,723 (+)NCBICHM1_1
T2T-CHM13v2.01718,624,083 - 18,624,733 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:339
Count of miRNA genes:311
Interacting mature miRNAs:331
Transcripts:ENST00000428091
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 1 5 5 5 14 4 17
Low 110 111 102 30 256 27 265 56 300 35 523 153 5 45 113
Below cutoff 1415 1707 949 236 878 161 2277 1185 2418 189 634 919 83 709 1439 2

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000428091
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1718,677,261 - 18,677,757 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC UBE2SP2 COSMIC
Ensembl Genes ENSG00000224126 Ensembl
GTEx ENSG00000224126 GTEx
HGNC ID HGNC:32196 ENTREZGENE
Human Proteome Map UBE2SP2 Human Proteome Map
NCBI Gene UBE2SP2 ENTREZGENE
PharmGKB PA142670654 PharmGKB


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-03-21 UBE2SP2  ubiquitin conjugating enzyme E2 S pseudogene 2    ubiquitin conjugating enzyme E2S pseudogene 2  Symbol and/or name change 5135510 APPROVED
2015-11-24 UBE2SP2  ubiquitin conjugating enzyme E2S pseudogene 2    ubiquitin-conjugating enzyme E2S pseudogene 2  Symbol and/or name change 5135510 APPROVED