EIF4EP2 (eukaryotic translation initiation factor 4E pseudogene 2) - Rat Genome Database

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Gene: EIF4EP2 (eukaryotic translation initiation factor 4E pseudogene 2) Homo sapiens
Analyze
Symbol: EIF4EP2
Name: eukaryotic translation initiation factor 4E pseudogene 2
RGD ID: 5509672
HGNC Page HGNC:32428
Description: INTERACTS WITH lipopolysaccharide
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Related Functional Gene: EIF4E  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381749,423,287 - 49,424,905 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1749,424,269 - 49,424,922 (-)EnsemblGRCh38hg38GRCh38
GRCh371747,500,649 - 47,502,267 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361744,855,640 - 44,857,307 (-)NCBINCBI36Build 36hg18NCBI36
Celera1743,955,672 - 43,957,316 (-)NCBICelera
Cytogenetic Map17q21.33NCBI
HuRef1742,865,643 - 42,867,287 (-)NCBIHuRef
CHM1_11747,565,812 - 47,567,443 (-)NCBICHM1_1
T2T-CHM13v2.01750,286,310 - 50,287,915 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:88
Count of miRNA genes:87
Interacting mature miRNAs:88
Transcripts:ENST00000398202, ENST00000422816
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 83 14 34 28 494 29 218 25 81 41 105 175 5
Low 496 760 621 136 363 96 1520 368 872 211 693 759 46 412 1035 4
Below cutoff 1648 1798 932 380 826 269 2410 1560 2390 145 567 619 111 734 1619

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000422816
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1749,424,269 - 49,424,922 (-)Ensembl
RefSeq Acc Id: XM_001726582
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
Build 361744,855,640 - 44,857,307 (-)NCBI Archive
Protein Sequences
GenBank Protein EAW94679 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences


Additional Information

Database Acc Id Source(s)
COSMIC EIF4EP2 COSMIC
Ensembl Genes ENSG00000229944 Ensembl
GTEx ENSG00000229944 GTEx
HGNC ID HGNC:32428 ENTREZGENE
Human Proteome Map EIF4EP2 Human Proteome Map
NCBI Gene 100131693 ENTREZGENE