Pira2-ps1 (paired-Ig-like receptor A2, pseudogene 1) - Rat Genome Database

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Gene: Pira2-ps1 (paired-Ig-like receptor A2, pseudogene 1) Mus musculus
Analyze
Symbol: Pira2-ps1
Name: paired-Ig-like receptor A2, pseudogene 1
RGD ID: 5146751
MGI Page MGI
Description:
Type: pseudo (Ensembl: unprocessed_pseudogene)
RefSeq Status: INFERRED
Previously known as: Gm15925
Related Functional Gene: Lilra6  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3973,789,284 - 3,802,619 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl73,791,882 - 3,802,630 (-)EnsemblGRCm39 Ensembl
GRCm3873,786,260 - 3,799,595 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl73,788,883 - 3,799,631 (-)EnsemblGRCm38mm10GRCm38
MGSCv3773,738,032 - 3,751,596 (-)NCBIGRCm37MGSCv37mm9NCBIm37
Cytogenetic Map7A1NCBI
cM Map72.19NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:32381589  


Genomics

Variants

.
Variants in Pira2-ps1
265 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:121
Count of miRNA genes:111
Interacting mature miRNAs:112
Transcripts:ENSMUST00000120641
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301177Vent3_mventricular size 3 (mouse)Not determined7120511925Mouse
10054067Sle20_msystematic lupus erythematosus susceptibility 20 (mouse)Not determined7120511925Mouse
1302188Lxw6_mlupus BXSB x NZW 6 (mouse)Not determined7121698146Mouse
12904941Edlmmq6_mextensor digitorum longus muscle mass QTL 6 (mouse)7121821047Mouse
12904948Tammq5_mtibialis anterior muscle mass QTL 5 (mouse)7121821047Mouse
12904953Gmmq5_mgastrocnemius muscle mass QTL 5 (mouse)7121821047Mouse
1301572Sluc30_msusceptibility to lung cancer 30 (mouse)Not determined7243169636431844Mouse
1302115Abhr3_mallergen-induced bronchial hyperresponsiveness 3 (mouse)Not determined7331599616637423Mouse
1301115Lrdm1_mlymphoproliferation (Fas) renal disease modifier 1 (mouse)Not determined7335204824879418Mouse
1300722Sle3_msystemic lupus erythmatosus susceptibility 3 (mouse)Not determined7351172887142720Mouse
25394570Skmw58_mskeletal muscle weight 58, TA (mouse)735524286281481Mouse
38501068Tip1_mtuberculosis immunophenotype 1, spleen CFU (mouse)7360299972549748Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000120641
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl73,791,882 - 3,802,630 (-)Ensembl
GRCm38.p6 Ensembl73,788,883 - 3,799,631 (-)Ensembl

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000080917 Ensembl, ENTREZGENE
MGD MGI:3801830 ENTREZGENE
NCBI Gene 100502662 ENTREZGENE
PhenoGen Pira2-ps1 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-05-03 Pira2-ps1  paired-Ig-like receptor A2, pseudogene 1  Gm15925  predicted gene 15925  Symbol and/or name updated 27372883 PROVISIONAL