Trav5n-3 (T cell receptor alpha variable 5N-3) - Rat Genome Database

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Gene: Trav5n-3 (T cell receptor alpha variable 5N-3) Mus musculus
Analyze
Symbol: Trav5n-3
Name: T cell receptor alpha variable 5N-3
RGD ID: 5144997
MGI Page MGI
Description:
Type: pseudo (Ensembl: TR_V_pseudogene)
RefSeq Status: VALIDATED
Previously known as: Gm17648
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391453,476,741 - 53,477,020 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1453,476,741 - 53,477,010 (+)EnsemblGRCm39 Ensembl
GRCm381453,239,284 - 53,239,563 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1453,239,284 - 53,239,553 (+)EnsemblGRCm38mm10GRCm38
MGSCv371453,858,959 - 53,859,238 (+)NCBIGRCm37MGSCv37mm9NCBIm37
Cytogenetic Map14C2NCBI
cM Map1427.28NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:15608191  


Genomics

Variants

.
Variants in Trav5n-3
1 total Variants

QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357589Kdnw2_mkidney weight 2 (mouse)Not determined1420887473121269804Mouse
1357527Epfpq1_mepididymal fat percentage QTL 1 (mouse)Not determined142106245071885801Mouse
14746973Manh76_mmandible shape 76 (mouse)142228721756287217Mouse
4142485Modor2_mmodifier of ocular retardation 2 (mouse)Not determined142492624858179769Mouse
13506929Recrq10_mrecombination rate in male meiosis QTL 10 (mouse)142792195761137449Mouse
10043886Cia49_mcollagen induced arthritis QTL 49 (mouse)Not determined142999699463997133Mouse
27226774Tibl15_mtibia length 15, 10 week (mouse)143032195787937436Mouse
1300909Ath13_matherosclerosis 13 (mouse)Not determined143033525064335381Mouse
1300998Cia17_mcollagen induced arthritis 17 (mouse)Not determined143033525064335381Mouse
27226737Metcl12_mmetatarsal-calcaneal length 12, 10 week (mouse)143322195759437449Mouse
1300625Cosz2_mcocaine seizure 2 (mouse)Not determined143504579768785736Mouse
10043887Cia50_mcollagen induced arthritis QTL 50 (mouse)Not determined143743018571430320Mouse
4142419Tgq26_mtriglyceride QTL 26 (mouse)Not determined4033731974337319Mouse
1301777Bglq15_mbody growth late QTL 15 (mouse)Not determined144296241676962593Mouse
1301424Skull21_mskull morphology 21 (mouse)Not determined144296241676962593Mouse
1300805Mors3_mmodifier of obesity related sterility 3 (mouse)Not determined144303727077037418Mouse
1301091Bbaa21_mB.burgdorferi-associated arthritis 21 (mouse)Not determined144306584777066045Mouse
4141400Nilac8_mnicotine induced locomotor activity 8 (mouse)Not determined144306584777066045Mouse
4141484Hcbip1_mhexachlorobenzene induced porphyria 1 (mouse)Not determined4733525059962593Mouse
1300605El5_mepilepsy 5 (mouse)Not determined144945542583455556Mouse
4142310Carg1_mCandida albicans resistance gene 1 (mouse)Not determined5138245954461655Mouse
4142364Pbwg18_mpostnatal body weight growth 18 (mouse)Not determined145228198486282125Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NG_007044 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC161460 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000164511
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1453,476,741 - 53,477,010 (+)Ensembl
GRCm38.p6 Ensembl1453,239,284 - 53,239,553 (+)Ensembl

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000105467 Ensembl, ENTREZGENE
MGD MGI:4937282 ENTREZGENE
NCBI Gene 100126455 ENTREZGENE
PhenoGen Trav5n-3 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-11-22 Trav5n-3  T cell receptor alpha variable 5N-3  Gm17648  predicted gene, 17648  Symbol and/or name change 5135510 APPROVED
2011-08-10 Gm17648  predicted gene, 17648  Trav5n-3  T cell receptor alpha variable 5N-3  Symbol and/or name change 5135510 APPROVED