Gm18190 (predicted gene, 18190) - Rat Genome Database

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Gene: Gm18190 (predicted gene, 18190) Mus musculus
Analyze
Symbol: Gm18190
Name: predicted gene, 18190
RGD ID: 5143368
MGI Page MGI
Description:
Type: pseudo (Ensembl: transcribed_unprocessed_pseudogene)
RefSeq Status: INFERRED
Related Functional Gene: Zfp772  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3977,268,500 - 7,269,080 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl77,268,497 - 7,272,334 (-)EnsemblGRCm39 Ensembl
GRCm3877,265,501 - 7,266,081 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl77,265,498 - 7,278,267 (-)EnsemblGRCm38mm10GRCm38
MGSCv3777,218,212 - 7,218,792 (-)NCBIGRCm37MGSCv37mm9NCBIm37
Cytogenetic Map7A1NCBI
cM Map74.22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in Gm18190
1 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:84
Count of miRNA genes:82
Interacting mature miRNAs:82
Transcripts:ENSMUST00000174801
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301177Vent3_mventricular size 3 (mouse)Not determined7120511925Mouse
10054067Sle20_msystematic lupus erythematosus susceptibility 20 (mouse)Not determined7120511925Mouse
1302188Lxw6_mlupus BXSB x NZW 6 (mouse)Not determined7121698146Mouse
12904941Edlmmq6_mextensor digitorum longus muscle mass QTL 6 (mouse)7121821047Mouse
12904948Tammq5_mtibialis anterior muscle mass QTL 5 (mouse)7121821047Mouse
12904953Gmmq5_mgastrocnemius muscle mass QTL 5 (mouse)7121821047Mouse
1301572Sluc30_msusceptibility to lung cancer 30 (mouse)Not determined7243169636431844Mouse
1302115Abhr3_mallergen-induced bronchial hyperresponsiveness 3 (mouse)Not determined7331599616637423Mouse
1301115Lrdm1_mlymphoproliferation (Fas) renal disease modifier 1 (mouse)Not determined7335204824879418Mouse
1300722Sle3_msystemic lupus erythmatosus susceptibility 3 (mouse)Not determined7351172887142720Mouse
38501068Tip1_mtuberculosis immunophenotype 1, spleen CFU (mouse)7360299972549748Mouse
25394569Skmw57_mskeletal muscle weight 57, gastroc (mouse)7458046916687861Mouse
25314307Mlh1fc2_mMLH1 foci count 2 (mouse)76502999133501729Mouse
12792978Fbmd3_mfemoral bone mineral density 3, females only (mouse)77050288142367832Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NG_018950 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC149056 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000174801
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl77,268,497 - 7,272,334 (-)Ensembl
GRCm38.p6 Ensembl77,265,498 - 7,269,335 (-)Ensembl
RefSeq Acc Id: ENSMUST00000209485
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl77,269,792 - 7,281,196 (-)Ensembl
GRCm38.p6 Ensembl77,266,793 - 7,278,197 (-)Ensembl
RefSeq Acc Id: ENSMUST00000209944
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl77,270,230 - 7,281,266 (-)Ensembl
GRCm38.p6 Ensembl77,267,231 - 7,278,267 (-)Ensembl
RefSeq Acc Id: ENSMUST00000210994
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl77,270,253 - 7,281,209 (-)Ensembl
GRCm38.p6 Ensembl77,267,254 - 7,278,210 (-)Ensembl

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000098900 Ensembl
MGD MGI:5010375 ENTREZGENE
NCBI Gene 100416683 ENTREZGENE
PhenoGen Gm18190 PhenoGen