Gm19696 (predicted gene, 19696) - Rat Genome Database

Name: Gm19696
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Gm19696 (predicted gene, 19696) Mus musculus

Analyze

Symbol:

Gm19696

Name:

predicted gene, 19696

RGD ID:

5136255

MGI Page

MGI

Description:

Type:

ncrna (Ensembl: lncRNA)

RefSeq Status:

VALIDATED

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	17	84,441,445 - 84,463,856 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	17	84,441,432 - 84,463,868 (-)	Ensembl		GRCm39 Ensembl
GRCm38	17	84,134,017 - 84,156,428 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	17	84,134,033 - 84,156,440 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	17	84,533,373 - 84,555,780 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
Celera	17	88,494,237 - 88,516,821 (-)	NCBI		Celera
Cytogenetic Map	17	E4	NCBI
cM Map	17	55.0	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

References

Additional References at PubMed

PMID:10349636	PMID:11042159	PMID:11076861	PMID:11217851	PMID:12466851	PMID:16141072	PMID:16141073	PMID:24200680	PMID:27899360

Genomics

Variants

Variants in Gm19696
574 total Variants

QTLs in Region (GRCm39)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1301338	Lmr1_m	leishmaniasis resistance 1 (mouse)			Not determined		17	10081340	86996400	Mouse
4141879	Chlq9_m	circulating hormone level QTL 9 (mouse)			Not determined		17	51758425	85758612	Mouse
1357532	Bmch7_m	bone mechanical trait 7 (mouse)			Not determined		17	51758425	85758612	Mouse
1357447	Heal13_m	wound healing/regeneration 13 (mouse)			Not determined		17	57107651	91107803	Mouse
4141758	Pstc5_m	periosteal circumference 5 (mouse)			Not determined		17	57107651	91107803	Mouse
4141011	Bmd26_m	bone mineral density 26 (mouse)			Not determined		17	57107651	91107803	Mouse
1300735	Pgia20_m	proteoglycan induced arthritis 20 (mouse)			Not determined		17	57107651	91107803	Mouse
12910536	Nrq8a_m	noise-induced hearing loss resistant QTL 8a (mouse)					17	57107651	91107803	Mouse
12910537	Nrq8_m	noise-induced hearing loss resistant QTL 8 (mouse)					17	57107651	91107803	Mouse
4142414	Pregq4_m	pregnancy QTL 4 (mouse)			Not determined		17	57534447	93507179	Mouse
4141040	Hmtb9_m	hemostasis and thrombosis rebleeding time 9 (mouse)			Not determined			57589089	91589197	Mouse
1301107	Scc4_m	colon tumor susceptibility 4 (mouse)			Not determined		17	62301010	95294699	Mouse
11528551	Sluc32_m	susceptibility to lung cancer 32 (mouse)					17	62301010	95294699	Mouse
1302017	Aliq3_m	acute lung injury QTL 3 (mouse)			Not determined		17	63885548	95294699	Mouse
1301728	Ffal1_m	free fatty acid level 1 (mouse)			Not determined		17	65214938	95294699	Mouse
14928308	Manh82_m	mandible shape 82 (mouse)					17	66315243	95294699	Mouse
4142256	Nilac12_m	nicotine induced locomotor activity 12 (mouse)			Not determined		17	68941319	95294699	Mouse
11039500	Ltpr7c_m	Leishmania tropica response 7c (mouse)					17	70701198	95294699	Mouse
11039498	Ltpr7b_m	Leishmania tropica response 7b (mouse)					17	70701198	95294699	Mouse
11039499	Ltpr7a_m	Leishmania tropica response 7a (mouse)					17	70701198	95294699	Mouse
11039514	Ltpr7_m	Leishmania tropica response 7 (mouse)					17	70701198	95294699	Mouse
1357528	Nhdlq3_m	non-HDL QTL 3 (mouse)			Not determined		17	73395132	95294699	Mouse
4141195	Nilac11_m	nicotine induced locomotor activity 11 (mouse)			Not determined		17	73395132	95294699	Mouse
4141697	Hbnr3_m	Heligmosomoides bakeri nematode resistance 3 (mouse)			Not determined			74107651	93507179	Mouse
1357646	Axtq3_m	anxiety QTL 3 (mouse)			Not determined		17	74589089	90395270	Mouse
1357552	Aaj4_m	anxiety in A/J 4 (mouse)			Not determined		17	74589089	90395270	Mouse
14697708	Stsl5_m	Salmonella typhimurium susceptibility locus 5 (mouse)					17	80807429	91407428	Mouse

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	NR_168022	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC132455	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AEKQ02080179	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK040143	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	KY467793	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSMUST00000234195

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	17	84,441,456 - 84,444,925 (-)	Ensembl
GRCm38.p6 Ensembl	17	84,135,352 - 84,137,497 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000234314

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	17	84,441,437 - 84,444,686 (-)	Ensembl
GRCm38.p6 Ensembl	17	84,134,901 - 84,137,228 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000234322

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	17	84,442,297 - 84,443,388 (-)	Ensembl
GRCm38.p6 Ensembl	17	84,134,869 - 84,135,960 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000234394

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	17	84,443,959 - 84,463,868 (-)	Ensembl
GRCm38.p6 Ensembl	17	84,136,531 - 84,156,440 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000234492

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	17	84,441,439 - 84,444,942 (-)	Ensembl
GRCm38.p6 Ensembl	17	84,135,426 - 84,137,514 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000234659

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	17	84,441,456 - 84,463,856 (-)	Ensembl
GRCm38.p6 Ensembl	17	84,135,352 - 84,156,426 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000234741

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	17	84,441,461 - 84,447,269 (-)	Ensembl
GRCm38.p6 Ensembl	17	84,134,033 - 84,139,841 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000240822

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	17	84,441,444 - 84,444,664 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000240879

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	17	84,441,462 - 84,444,666 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000241562

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	17	84,441,437 - 84,444,668 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000241922

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	17	84,441,440 - 84,444,668 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000242026

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	17	84,441,441 - 84,444,619 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000242285

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	17	84,441,462 - 84,444,666 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000242592

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	17	84,441,437 - 84,444,686 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000242663

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	17	84,441,460 - 84,444,668 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000243187

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	17	84,441,462 - 84,444,635 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000243269

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	17	84,441,441 - 84,463,863 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000243569

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	17	84,441,440 - 84,444,686 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000243580

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	17	84,441,456 - 84,444,668 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000243660

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	17	84,441,438 - 84,444,666 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000243704

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	17	84,441,463 - 84,444,666 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000244397

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	17	84,441,440 - 84,444,671 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000244433

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	17	84,441,441 - 84,444,666 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000244545

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	17	84,441,462 - 84,444,630 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000244579

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	17	84,441,454 - 84,444,666 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000244613

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	17	84,441,441 - 84,444,668 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000245020

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	17	84,441,462 - 84,444,664 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000245089

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	17	84,441,456 - 84,444,664 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000245513

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	17	84,441,442 - 84,444,666 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000246247

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	17	84,441,442 - 84,444,668 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000246296

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	17	84,441,444 - 84,444,666 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000246348

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	17	84,441,456 - 84,444,666 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000246373

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	17	84,441,456 - 84,444,666 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000246436

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	17	84,441,432 - 84,444,668 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000246576

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	17	84,441,460 - 84,444,630 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000246639

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	17	84,441,454 - 84,444,666 (-)	Ensembl

RefSeq Acc Id:

NR_168022

RefSeq Status:

VALIDATED

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	17	84,441,445 - 84,463,856 (-)	NCBI
GRCm38	17	84,134,017 - 84,156,428 (-)	NCBI

Sequence:

show sequence

AGAGAAGGCTTCAGAGGTGAATCAGTGAGGAGAGGTTCCTGAGAGACGAACGGGCGTCGGAGGA
GTTATGTGCAGCACAACTGGGACGCGCTGGAGCACGTGACACAAGGCACTGTGTCACAGAATCC
CCAGACATACAGCCTGTTGCAAGGGTGCAGAGGACTCATGCTCCGGCTAGTCCCCACGCAGGCC
TTTTGAGAAGGTGAATCAGCGTGTGTTAGCTCAGGGCAGAGGGCCTGGCGGTGAGACGTGAGAA
CAGCCAATGTCATGGCGGTGGGGGAGTGGACGTGAGCCATCTGGGGCCCAGCAAACAGCATGTT
GAAAAAAACGAGGAACTCAAAGGCAGATGAGCCTACCACGCTGGGAACAGTTGGGAGTACATTG
CTCAAGCCCCGGCCAGTTTTATGTCACTGCTGGTGTGAAGCAGTGAACAGTGACCCAGCATGCA
TCCAGGTGGCGGGACAGAGTCAGACTCTCCAGGGCAGAGAGACTCTAAAACTGACGGCCAGGTC
TTGCTCAGACTACGGGCCTGAGGGAAGATCCAAGACTGAAACAGGGCTTGGAATGGAGGGGGTG
GAGTTGAGGAGATCACAGAGGACCTAGGAGTGTGTGTATCGGAGAGAGATAGGAAACCACTGAC
CGTTCAGCACACATTCAGAATTACTGCCTGTCCCAGGGAGGGACCCACAGCTCCGGCGCTCCGT
TCAGCATCTGGAAGAGCATAGCTCGCTGTGAGCGGCCGCCCCAGAAGACTGTATCCCACCCAGC
CAGCTCTCCTGCCTGCTTGCCTCTGCCCCACACCAGGACACTTCATACTGTCAGAACCACTGGG
TGTGTGAGCTTGTGAGAGGGTGTGTGGGCACACATGTCCCTGTGTGGGGTGTGGAGGTCAGAGG
GCAACTTGGAGGAATTGGTTCTCTCCTTCCACCACTGGGGCCCAGGAATCAAGCCGAGGTTCCC
AGACGTGGTAGCAGCCTCCCTTACCTGTTAAACCAGTGCTTCCCAGACTTCCTAATGCTGTGAC
CTCATGCTGTGCTGACCCCCGCCCATGACATTATCTCTGTTGGTATTTTATAACTGTAATTTTG
CTACTATTATGAATCACAATGTAAATGTCTGTTTTC

hide sequence

Promoters

RGD ID:

15094896

Promoter ID:

EPDNEWNC_M2810

Type:

initiation region

Name:

Gm19696_2

Description:

predicted gene, 19696 [Source:MGI Symbol;Acc:MGI:5011881]

SO ACC ID:

SO:0000170

Source:

EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	17	84,137,237 - 84,137,297	EPDNEWNC

RGD ID:

15094894

Promoter ID:

EPDNEWNC_M2811

Type:

initiation region

Name:

Gm19696_1

Description:

predicted gene, 19696 [Source:MGI Symbol;Acc:MGI:5011881]

SO ACC ID:

SO:0000170

Source:

EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	17	84,156,405 - 84,156,465	EPDNEWNC

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSMUSG00000117485	Ensembl, ENTREZGENE
Ensembl Transcript	ENSMUST00000234659	ENTREZGENE
MGD	MGI:5011881	ENTREZGENE
NCBI Gene	100503447	ENTREZGENE
PhenoGen	Gm19696	PhenoGen
RNAcentral	URS0001BBE60B	RNACentral

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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