Gm20337 (predicted gene, 20337) - Rat Genome Database

Name: Gm20337
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Gm20337 (predicted gene, 20337) Mus musculus

Analyze

Symbol:

Gm20337

Name:

predicted gene, 20337

RGD ID:

5135740

MGI Page

MGI

Description:

Type:

ncrna (Ensembl: lncRNA)

RefSeq Status:

VALIDATED

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	12	80,989,426 - 80,992,173 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	12	80,988,323 - 80,992,173 (-)	Ensembl		GRCm39 Ensembl
GRCm38	12	80,942,652 - 80,945,399 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	12	80,942,673 - 80,945,396 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	12	82,043,639 - 82,046,386 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
Celera	12	82,408,176 - 82,410,920 (-)	NCBI		Celera
Cytogenetic Map	12	D1	NCBI
cM Map	12	37.2	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

References

Additional References at PubMed

PMID:10349636	PMID:11042159	PMID:11076861	PMID:11217851	PMID:12466851	PMID:14610273	PMID:16141072	PMID:16141073	PMID:24200680	PMID:27899360

Genomics

Variants

Variants in Gm20337
103 total Variants

QTLs in Region (GRCm39)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
27226753	Femd7_m	femur midshaft diameter 7, 10 week (mouse)					12	9550000	84146774	Mouse
13207568	Tcq14_m	total cholesterol QTL 14 (mouse)					12	11660001	97176774	Mouse
4142002	Tbqt3_m	tibia bone quality traits 3 (mouse)			Not determined		12	35285496	109936243	Mouse
1357479	Splwt1_m	spleen weight 1 (mouse)			Not determined		12	41693175	90887526	Mouse
1357757	Lnopy2_m	lens opacity 2 (mouse)			Not determined		12	52846626	86846796	Mouse
1357749	Vtbt13_m	vertebral trabecular bone trait 13 (mouse)			Not determined		12	53132002	87132145	Mouse
12832727	Ahrq1_m	airway hyperresponsiveness QTL 1 (mouse)					12	54695910	82665939	Mouse
27226728	Tibl20_m	tibia length 20, 16 week (mouse)					12	59146786	93866774	Mouse
27226776	Tibl6_m	tibia length 6, 5 week (mouse)					12	60646786	92666774	Mouse
10043948	Pbft6_m	percent body fat 6 (mouse)			Not determined		12	61205427	95205427	Mouse
1301476	Pbwg12_m	postnatal body weight growth 12 (mouse)			Not determined		12	62040164	96040364	Mouse
27226797	Scvln19_m	sacral vertebrae length 2, 16 week (mouse)					12	62146786	99466259	Mouse
10043895	Bw20_m	body weight QTL 20 (mouse)			Not determined		12	62308252	96308252	Mouse
1301046	Par3_m	pulmonary adenoma resistance 3 (mouse)			Not determined		12	63956708	97956883	Mouse
1301337	Cdcs8_m	cytokine deficiency colitis susceptibility 8 (mouse)			Not determined		12	64689083	98689229	Mouse
1300633	Cdcs7_m	cytokine deficiency colitis susceptibility 7 (mouse)			Not determined		12	64689083	98689229	Mouse
14746976	Manh73_m	mandible shape 73 (mouse)					12	65857131	99857131	Mouse
27226771	Tibl14_m	tibia length 14, 10 week (mouse)					12	68346774	98766259	Mouse
27226793	Feml10_m	femur length 10, 5 week (mouse)					12	68346774	113363620	Mouse
4141738	Tgq23_m	triglyceride QTL 23 (mouse)			Not determined			72112877	106112877	Mouse
1301926	Adip6_m	adiposity 6 (mouse)			Not determined		12	73887422	107887526	Mouse
1301689	Skull18_m	skull morphology 18 (mouse)			Not determined		12	73887422	107887526	Mouse
13524842	Ppiq10a_m	prepulse inhibition QTL 10a (mouse)					12	77512220	111512220	Mouse
1301868	Fbgl1_m	fasting blood glucose 1 (mouse)			Not determined		12	79040164	83162211	Mouse
4141610	Tailaq1_m	tail length adjusted QTL 1 (mouse)			Not determined			80956708	113383533	Mouse
4142401	Egq10_m	early growth QTL 10 (mouse)			Not determined			80956708	113383533	Mouse
4141335	W6q10_m	weight 6 weeks QTL 10 (mouse)			Not determined			80956708	113383533	Mouse
39128213	Lwq23_m	liver weight QTL 10 (mouse)					12	80956708	113383533	Mouse
13524849	Ppiq11a_m	prepulse inhibition QTL 11a (mouse)					12	80989143	114989143	Mouse

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	NR_045057	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC125092	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC127337	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK145430	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	KY467645	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSMUST00000219062

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	12	80,988,323 - 80,992,173 (-)	Ensembl
GRCm38.p6 Ensembl	12	80,942,673 - 80,945,396 (-)	Ensembl

RefSeq Acc Id:

NR_045057

RefSeq Status:

VALIDATED

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	12	80,989,426 - 80,992,173 (-)	NCBI
GRCm38	12	80,942,652 - 80,945,399 (-)	ENTREZGENE
Celera	12	82,408,176 - 82,410,920 (-)	ENTREZGENE
cM Map	12		ENTREZGENE

Sequence:

show sequence

GGCGGGGCTTCCTTACCGCGACCCCTGGCGAGAGCAGTGGGTGGTGGGAGGACTAGAAACGTTC
GTTCAGTTGGCAGGATACACCGGGACACTTCTTTGGATACGAAAAGATGTATTTAAACTTTTTC
TTAGGTCCCTCGAAGATTACCAAGAAACCCAGGCTTTTCAAAAATCACCTGTTTCTTTTAAAAA
TTCATTTACATAGTCGGTCTCGCTAAGCAGTCCTGGCTAGCCTTGAGCTCAGCGATCCAGCCGG
TCCGCCTTCAGTGTGATAGGATTATTGGCCCGAGCACCAGGTCCAATTCTTTCTTTCTTTCTTT
CTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTCCTTCCTTC
CTTCCTTCCTTCCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTCTCTTTAGCCTCTT
CTGCAAATTGTACTTATCAATGTCCTTCAAGAGAGGGTTCTTAGCCGGGCGTGGTGGCACACGC
CTTTAATCCTAGCACTTGGGAGGCAGAGGCAGGAGGATTTCTGAGTTCAAGGCCAGCCTGGTCT
ACAGAGTGAGTTCCAGGACAGCCTGGTCTACACAGAGAAATCCTGCCTCGGAAAAAAGAGAGAG
AGAGAGGGTTCTCTGAGGCTCAAATTGGACATCCCCATCTTGAATCAGAGCAGCTGTTGACCAA
CCACAGAGCCTCTGGAAGTCAGGCCTATCAGCATTCCTGCATGGAAGACTGAGGAAAGCTCCTC
CCAGAAGCTGTATCAGCAGTGAATGATGACTGGGAAGAGAGATTGCTGGTACCATAGGCTGCCT
TTGACTCGCCCAAGGCCCTGAAACATCACACAACAGAGCTGAAATTTCCTATTGCCTAATGACA
ATGTGGCCGGGACATCATCTCAGCATAATGCATTCCTCACACGTTCGTGGCAATGGTCTCCGGT
GTAAACAAGCCTGCCCTTCAGCCGGCCAGAGAGAACACACAGTACTGTACAGTACATAATACTT
GATAACTAAATGACTATATATTTACTATTATTGTTTTAGAGTATAGGGGTTTTTTTAAGATATT
TTACTGTGTGTCTTAGTTTGCTTTTATAAATGTAATAAAACACTAACCAAAACC

hide sequence

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSMUSG00000112880	Ensembl
MGD	MGI:5012522	ENTREZGENE
NCBI Gene	100504661	ENTREZGENE
PhenoGen	Gm20337	PhenoGen
RNAcentral	URS000075E20A	RNACentral

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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