Mir3962 (microRNA 3962) - Rat Genome Database

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Gene: Mir3962 (microRNA 3962) Mus musculus
Analyze
Symbol: Mir3962
Name: microRNA 3962
RGD ID: 5134278
MGI Page MGI
Description: microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]
Type: ncrna (Ensembl: miRNA)
RefSeq Status: PROVISIONAL
Previously known as: mir-3962; mmu-mir-3962; mu-mir-3962
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391194,504,309 - 194,504,372 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1194,504,309 - 194,504,372 (+)EnsemblGRCm39 Ensembl
GRCm381194,822,001 - 194,822,064 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1194,822,001 - 194,822,064 (+)EnsemblGRCm38mm10GRCm38
Celera1201,721,891 - 201,721,954 (+)NCBICelera
Cytogenetic Map1H6NCBI
cM Map198.34NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:16381832   PMID:20935160   PMID:21037258   PMID:21403133  


Genomics

Variants

.
Variants in Mir3962
2 total Variants
miRNA Target Status

Predicted Targets
Summary Value
Count of predictions:5485
Count of gene targets:3409
Count of transcripts:4909
Interacting mature miRNAs:mmu-miR-3962
Prediction methods:Microtar, Miranda, Pita, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
11039528Ccc3_mcolitis susceptibility in the Collaborative Cross 3 (mouse)13680142195051546Mouse
1301632Bw8q1_mbody weight at 8 weeks QTL 1 (mouse)Not determined1161201261195154279Mouse
1301339Hdlq15_mHDL QTL 15 (mouse)Not determined1165873675195154279Mouse
1302158Fembrs5_mfemur breaking strength 5 (mouse)Not determined1167462514195154279Mouse
1559024Zit1_mzinc induced tolerance 1 (mouse)Not determined1167462514195154279Mouse
4141483Femwf7_mfemur work to failure 7 (mouse)Not determined167462514195154279Mouse
1558802Skmw6_mskeletal muscle weight 6 (mouse)Not determined1167954584195154279Mouse
1301251Scc3_mcolon tumor susceptibility 3 (mouse)Not determined1168213823195154279Mouse
1301132Mors1_mmodifier of obesity related sterility 1 (mouse)Not determined1170379500195154279Mouse
1357732Tbbmd1_mtotal body bone mineral density 1 (mouse)Not determined1171983110195154279Mouse
11049575Lmr8b_mleishmaniasis resistance 8b (mouse)1172303451195154279Mouse
1301652Cpfd2_mcerebellum pattern fissures (mouse)Not determined1172303451195154279Mouse
10043863Swrl5_mSWR lupus locus 5 (mouse)Not determined1172303451195154279Mouse
12880426V25Dq2_mvitamin D inactive form serum level QTL 2 (mouse)1172532197195154279Mouse
12880429V25Dq1_mvitamin D inactive form serum level QTL 1 (mouse)1172632197195154279Mouse
1302023Orch4_mautoimmune orchitis resistance 4 (mouse)Not determined1175211318195154279Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000174892
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1194,504,309 - 194,504,372 (+)Ensembl
GRCm38.p6 Ensembl1194,822,001 - 194,822,064 (+)Ensembl
RefSeq Acc Id: NR_039539
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391194,504,309 - 194,504,372 (+)NCBI
GRCm381194,822,001 - 194,822,064 (+)ENTREZGENE
Celera1201,721,891 - 201,721,954 (+)ENTREZGENE
cM Map1 ENTREZGENE
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000092633 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000174892 ENTREZGENE
MGD MGI:4950397 ENTREZGENE
miRBase MI0016967 ENTREZGENE
NCBI Gene 100628615 ENTREZGENE
PhenoGen Mir3962 PhenoGen
RNAcentral URS00005400DC RNACentral
  URS000075D3E5 RNACentral