ZNF444P1 (zinc finger protein 444 pseudogene 1) - Rat Genome Database

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Gene: ZNF444P1 (zinc finger protein 444 pseudogene 1) Homo sapiens
Analyze
Symbol: ZNF444P1
Name: zinc finger protein 444 pseudogene 1
RGD ID: 5130797
HGNC Page HGNC:35157
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: ZNF864P
Related Functional Gene: ZNF444  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381558,864,809 - 58,865,310 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1558,865,006 - 58,865,303 (+)EnsemblGRCh38hg38GRCh38
GRCh371559,157,008 - 59,157,509 (+)NCBIGRCh37GRCh37hg19GRCh37
Celera1536,045,149 - 36,045,815 (+)NCBICelera
Cytogenetic Map15q22.1NCBI
HuRef1535,980,114 - 35,980,780 (+)NCBIHuRef
CHM1_11559,275,117 - 59,275,783 (+)NCBICHM1_1
T2T-CHM13v2.01556,666,837 - 56,667,338 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:359
Count of miRNA genes:321
Interacting mature miRNAs:350
Transcripts:ENST00000559497
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 3 3 3 1 3 2 3 83 14
Low 464 509 640 130 133 125 638 300 397 122 737 353 8 494 238 1
Below cutoff 578 475 331 132 235 116 836 583 710 120 164 331 20 303 485 3

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000559497
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1558,865,006 - 58,865,303 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC ZNF444P1 COSMIC
Ensembl Genes ENSG00000259738 Ensembl
GTEx ENSG00000259738 GTEx
HGNC ID HGNC:35157 ENTREZGENE
Human Proteome Map ZNF444P1 Human Proteome Map
NCBI Gene 100419866 ENTREZGENE