SNX18P3 (sorting nexin 18 pseudogene 3) - Rat Genome Database

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Gene: SNX18P3 (sorting nexin 18 pseudogene 3) Homo sapiens
Analyze
Symbol: SNX18P3
Name: sorting nexin 18 pseudogene 3
RGD ID: 5128991
HGNC Page HGNC:39611
Description: INTERACTS WITH ethylparaben; lipopolysaccharide; S-(1,2-dichlorovinyl)-L-cysteine
Type: pseudo (Ensembl: transcribed_unprocessed_pseudogene)
RefSeq Status: INFERRED
Related Functional Gene: SNX18  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38938,567,401 - 38,569,182 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl938,567,377 - 38,568,211 (-)EnsemblGRCh38hg38GRCh38
GRCh37938,567,398 - 38,569,179 (-)NCBIGRCh37GRCh37hg19GRCh37
Celera938,503,306 - 38,505,087 (-)NCBICelera
Cytogenetic Map9p13.1NCBI
HuRef938,520,488 - 38,522,269 (-)NCBIHuRef
CHM1_1938,569,179 - 38,570,960 (-)NCBICHM1_1
T2T-CHM13v2.0938,591,599 - 38,593,380 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:159
Count of miRNA genes:150
Interacting mature miRNAs:150
Transcripts:ENST00000424993, ENST00000565670
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 19 3 14 5 18 6 23 6 16 9 367 51
Low 553 276 1093 220 386 135 1756 115 1928 198 486 1106 97 3 932 4
Below cutoff 1454 1588 453 342 1082 268 1023 1152 1680 188 383 426 73 566 716

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000424993
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl938,567,377 - 38,568,211 (-)Ensembl
RefSeq Acc Id: ENST00000565670
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl938,566,260 - 38,568,009 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC SNX18P3 COSMIC
Ensembl Genes ENSG00000225345 Ensembl
GTEx ENSG00000225345 GTEx
HGNC ID HGNC:39611 ENTREZGENE
Human Proteome Map SNX18P3 Human Proteome Map
NCBI Gene 100418975 ENTREZGENE