HNRNPA1P25 (heterogeneous nuclear ribonucleoprotein A1 pseudogene 25) - Rat Genome Database

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Gene: HNRNPA1P25 (heterogeneous nuclear ribonucleoprotein A1 pseudogene 25) Homo sapiens
Analyze
Symbol: HNRNPA1P25
Name: heterogeneous nuclear ribonucleoprotein A1 pseudogene 25
RGD ID: 5013922
HGNC Page HGNC:39543
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X74,472,680 - 74,474,013 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX74,473,017 - 74,473,953 (-)EnsemblGRCh38hg38GRCh38
GRCh37X73,692,515 - 73,693,848 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X73,609,575 - 73,667,308 (-)NCBINCBI36Build 36hg18NCBI36
CeleraX73,976,428 - 73,977,360 (-)NCBICelera
Cytogenetic MapXq13.2NCBI
HuRefX67,327,301 - 67,328,647 (-)NCBIHuRef
CHM1_1X73,585,410 - 73,586,756 (-)NCBICHM1_1
T2T-CHM13v2.0X72,906,315 - 72,907,647 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:184
Count of miRNA genes:172
Interacting mature miRNAs:177
Transcripts:ENST00000422644
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
DXS128  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37X73,836,138 - 73,836,302UniSTSGRCh37
GRCh37X73,753,323 - 73,753,666UniSTSGRCh37
GRCh37X73,746,411 - 73,746,623UniSTSGRCh37
GRCh37X73,656,093 - 73,656,283UniSTSGRCh37
Build 36X73,572,818 - 73,573,008RGDNCBI36
CeleraX74,029,996 - 74,030,208UniSTS
CeleraX74,119,604 - 74,119,768UniSTS
CeleraX74,036,906 - 74,037,249UniSTS
CeleraX73,939,525 - 73,939,715RGD
Cytogenetic MapXq13.2UniSTS
HuRefX67,471,021 - 67,471,185UniSTS
HuRefX67,388,419 - 67,388,762UniSTS
HuRefX67,381,616 - 67,381,828UniSTS
HuRefX67,291,441 - 67,291,631UniSTS
Whitehead-YAC Contig MapX UniSTS
GeneMap99-G3 RH MapX2007.0UniSTS
GDB:600880  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37X73,740,901 - 73,740,988UniSTSGRCh37
Build 36X73,657,626 - 73,657,713RGDNCBI36
CeleraX74,024,486 - 74,024,573RGD
Cytogenetic MapXq13.2UniSTS
HuRefX67,376,273 - 67,376,360UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium
Low 17 10 4 4 59 4 11 2 27 12 26 3 9
Below cutoff 771 835 609 143 342 92 1501 603 1288 93 494 606 58 437 998 2

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000422644
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 EnsemblX74,473,017 - 74,473,953 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC HNRNPA1P25 COSMIC
Ensembl Genes ENSG00000231206 Ensembl
GTEx ENSG00000231206 GTEx
HGNC ID HGNC:39543 ENTREZGENE
Human Proteome Map HNRNPA1P25 Human Proteome Map
NCBI Gene 100131983 ENTREZGENE