TATDN2P2 (TatD DNase domain containing 2 pseudogene 2) - Rat Genome Database

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Gene: TATDN2P2 (TatD DNase domain containing 2 pseudogene 2) Homo sapiens
Analyze
Symbol: TATDN2P2
Name: TatD DNase domain containing 2 pseudogene 2
RGD ID: 4889287
HGNC Page HGNC:39255
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: KIAA0218
Related Functional Gene: TATDN2  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386158,609,328 - 158,611,726 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl6158,609,706 - 158,621,636 (-)EnsemblGRCh38hg38GRCh38
GRCh376159,030,360 - 159,032,758 (-)NCBIGRCh37GRCh37hg19GRCh37
Celera6159,678,358 - 159,680,742 (-)NCBICelera
Cytogenetic Map6q25.3NCBI
HuRef6156,501,235 - 156,503,619 (-)NCBIHuRef
CHM1_16159,292,918 - 159,295,302 (-)NCBICHM1_1
T2T-CHM13v2.06159,854,504 - 159,856,900 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:256
Count of miRNA genes:241
Interacting mature miRNAs:255
Transcripts:ENST00000403590
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 32 2 14 14 59 13 22 6 13 5 24 68 3 5
Low 1577 1750 980 246 1311 91 3960 1122 1102 196 1132 1324 161 1088 2475 2
Below cutoff 803 1210 668 309 560 304 361 1027 2523 200 258 177 6 115 307 1

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000403590
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl6158,609,706 - 158,621,636 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC TATDN2P2 COSMIC
Ensembl Genes ENSG00000218226 Ensembl
GTEx ENSG00000218226 GTEx
HGNC ID HGNC:39255 ENTREZGENE
Human Proteome Map TATDN2P2 Human Proteome Map
NCBI Gene 100272205 ENTREZGENE