HMGB3P7 (high mobility group box 3 pseudogene 7) - Rat Genome Database

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Gene: HMGB3P7 (high mobility group box 3 pseudogene 7) Homo sapiens
Analyze
Symbol: HMGB3P7
Name: high mobility group box 3 pseudogene 7
RGD ID: 4889252
HGNC Page HGNC:39299
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Related Functional Gene: HMGB3  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3813101,801,832 - 101,802,709 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl13101,801,878 - 101,802,488 (+)EnsemblGRCh38hg38GRCh38
GRCh3713102,454,182 - 102,455,059 (+)NCBIGRCh37GRCh37hg19GRCh37
Celera1383,297,009 - 83,297,540 (+)NCBICelera
Cytogenetic Map13q33.1NCBI
HuRef1383,047,628 - 83,048,159 (+)NCBIHuRef
CHM1_113102,424,295 - 102,424,826 (+)NCBICHM1_1
T2T-CHM13v2.013101,018,145 - 101,019,022 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:12727900  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:129
Count of miRNA genes:125
Interacting mature miRNAs:129
Transcripts:ENST00000400214
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 2 280 1 58 3 7 1 7 2 55
Low 671 1115 505 146 16 68 2462 647 1181 21 159 596 78 387 1735
Below cutoff 752 603 695 269 180 200 969 867 1265 141 538 557 72 432 550 1

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000400214
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl13101,801,878 - 101,802,488 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC HMGB3P7 COSMIC
Ensembl Genes ENSG00000215399 Ensembl
GTEx ENSG00000215399 GTEx
HGNC ID HGNC:39299 ENTREZGENE
Human Proteome Map HMGB3P7 Human Proteome Map
NCBI Gene 100420033 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-07-27 HMGB3P7  high mobility group box 3 pseudogene 7  HMGB3P7  high-mobility group box 3 pseudogene 7  Symbol and/or name change 5135510 APPROVED