RFKP1 (riboflavin kinase pseudogene 1) - Rat Genome Database

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Gene: RFKP1 (riboflavin kinase pseudogene 1) Homo sapiens
Analyze
Symbol: RFKP1
Name: riboflavin kinase pseudogene 1
RGD ID: 4888992
HGNC Page HGNC:39181
Description:
Type: pseudo (Ensembl: transcribed_processed_pseudogene)
RefSeq Status: INFERRED
Related Functional Gene: RFK  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381240,822,554 - 240,823,672 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1240,823,006 - 240,823,433 (-)EnsemblGRCh38hg38GRCh38
GRCh371240,985,854 - 240,986,972 (-)NCBIGRCh37GRCh37hg19GRCh37
Celera1214,242,288 - 214,243,716 (-)NCBICelera
Cytogenetic Map1q43NCBI
HuRef1211,443,578 - 211,445,006 (-)NCBIHuRef
CHM1_11242,257,828 - 242,259,256 (-)NCBICHM1_1
T2T-CHM13v2.01240,234,016 - 240,235,134 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:126
Count of miRNA genes:106
Interacting mature miRNAs:107
Transcripts:ENST00000400940
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium
Low 1 2 5 1 1 141 34 8 1
Below cutoff 52 14 74 5 31 4 72 17 1135 6 225 50 1 11 51

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000400940
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1240,823,006 - 240,823,433 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RFKP1 COSMIC
Ensembl Genes ENSG00000215802 Ensembl
GTEx ENSG00000215802 GTEx
HGNC ID HGNC:39181 ENTREZGENE
Human Proteome Map RFKP1 Human Proteome Map
NCBI Gene 100313962 ENTREZGENE