SUMO2P7 (SUMO2 pseudogene 7) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: SUMO2P7 (SUMO2 pseudogene 7) Homo sapiens
Analyze
Symbol: SUMO2P7
Name: SUMO2 pseudogene 7
RGD ID: 4144231
HGNC Page HGNC:39017
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: SMT3 suppressor of mif two 3 homolog 2 (S. cerevisiae) pseudogene 7
Related Functional Gene: SUMO2  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381750,235,749 - 50,236,350 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1750,235,845 - 50,236,129 (+)EnsemblGRCh38hg38GRCh38
GRCh371748,313,110 - 48,313,711 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361745,668,205 - 45,668,492 (+)NCBINCBI36Build 36hg18NCBI36
Celera1744,774,055 - 44,774,342 (+)NCBICelera
Cytogenetic Map17q21.33NCBI
HuRef1743,681,470 - 43,681,754 (+)NCBIHuRef
CHM1_11748,377,505 - 48,377,789 (+)NCBICHM1_1
T2T-CHM13v2.01751,102,818 - 51,103,420 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:168
Count of miRNA genes:166
Interacting mature miRNAs:168
Transcripts:ENST00000511179
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium
Low 6 14 3 7 9 2 7 7 23 8 1 7
Below cutoff 143 235 74 19 69 9 302 102 210 27 160 94 10 73 213

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000511179
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1750,235,845 - 50,236,129 (+)Ensembl
RefSeq Acc Id: XM_003118743
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh371748,313,206 - 48,313,493 (+)RGD
RefSeq Acc Id: XM_003119681
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
HuRef1743,681,470 - 43,681,757 (+)RGD
RefSeq Acc Id: XM_003120888
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
Celera1744,774,055 - 44,774,342 (+)RGD

Additional Information

Database Acc Id Source(s)
COSMIC SUMO2P7 COSMIC
Ensembl Genes ENSG00000249838 Ensembl
GTEx ENSG00000249838 GTEx
HGNC ID HGNC:39017 ENTREZGENE
Human Proteome Map SUMO2P7 Human Proteome Map
NCBI Gene 100131823 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-06-11 SUMO2P7  SUMO2 pseudogene 7    SMT3 suppressor of mif two 3 homolog 2 (S. cerevisiae) pseudogene 7  Symbol and/or name change 5135510 APPROVED