USP9YP19 (USP9Y pseudogene 19) - Rat Genome Database

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Gene: USP9YP19 (USP9Y pseudogene 19) Homo sapiens
Analyze
Symbol: USP9YP19
Name: USP9Y pseudogene 19
RGD ID: 4143663
HGNC Page HGNC:38755
Description:
Type: pseudo (Ensembl: unprocessed_pseudogene)
RefSeq Status: INFERRED
Previously known as: ubiquitin specific peptidase 9, Y-linked pseudogene 19
Related Functional Gene: USP9Y  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38Y25,748,860 - 25,749,988 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblY25,748,596 - 25,750,206 (-)EnsemblGRCh38hg38GRCh38
GRCh37Y27,895,007 - 27,896,135 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic MapYq11.23NCBI
T2T-CHM13v2.0Y26,561,259 - 26,562,388 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:52
Count of miRNA genes:52
Interacting mature miRNAs:52
Transcripts:ENST00000412165
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system musculoskeletal system nervous system renal system respiratory system sensory system
High
Medium
Low
Below cutoff 3 1 2 3 1 1

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000412165
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 EnsemblY25,748,596 - 25,750,206 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC USP9YP19 COSMIC
Ensembl Genes ENSG00000225326 Ensembl
GTEx ENSG00000225326 GTEx
HGNC ID HGNC:38755 ENTREZGENE
Human Proteome Map USP9YP19 Human Proteome Map
NCBI Gene 100500797 ENTREZGENE
PharmGKB PA165791887 PharmGKB


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-05-01 USP9YP19  USP9Y pseudogene 19    ubiquitin specific peptidase 9, Y-linked pseudogene 19  Symbol and/or name change 5135510 APPROVED