ST13P16 (ST13, Hsp70 interacting protein pseudogene 16) - Rat Genome Database

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Gene: ST13P16 (ST13, Hsp70 interacting protein pseudogene 16) Homo sapiens
Analyze
Symbol: ST13P16
Name: ST13, Hsp70 interacting protein pseudogene 16
RGD ID: 4140335
HGNC Page HGNC:38851
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein) pseudogene 16
Related Functional Gene: ST13  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38687,444,198 - 87,445,177 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl687,444,395 - 87,445,175 (-)EnsemblGRCh38hg38GRCh38
GRCh37688,153,916 - 88,154,895 (-)NCBIGRCh37GRCh37hg19GRCh37
Celera688,572,908 - 88,573,688 (-)NCBICelera
Cytogenetic Map6q15NCBI
HuRef685,370,149 - 85,370,929 (-)NCBIHuRef
CHM1_1688,251,617 - 88,252,397 (-)NCBICHM1_1
T2T-CHM13v2.0688,652,932 - 88,653,911 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:129
Count of miRNA genes:125
Interacting mature miRNAs:129
Transcripts:ENST00000401760
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium
Low 4 1 6 3 14 18 1
Below cutoff 107 128 341 29 89 15 273 96 490 59 365 326 16 76 190

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000401760
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl687,444,395 - 87,445,175 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC ST13P16 COSMIC
Ensembl Genes ENSG00000218698 Ensembl
GTEx ENSG00000218698 GTEx
HGNC ID HGNC:38851 ENTREZGENE
Human Proteome Map ST13P16 Human Proteome Map
NCBI Gene 100422605 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-03-07 ST13P16  ST13, Hsp70 interacting protein pseudogene 16    suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein) pseudogene 16  Symbol and/or name change 5135510 APPROVED