ST13P10 (ST13, Hsp70 interacting protein pseudogene 10) - Rat Genome Database

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Gene: ST13P10 (ST13, Hsp70 interacting protein pseudogene 10) Homo sapiens
Analyze
Symbol: ST13P10
Name: ST13, Hsp70 interacting protein pseudogene 10
RGD ID: 4140313
HGNC Page HGNC:38745
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein) pseudogene 10
Related Functional Gene: ST13  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3811112,267,104 - 112,268,457 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl11112,267,290 - 112,268,371 (-)EnsemblGRCh38hg38GRCh38
GRCh3711112,137,827 - 112,139,180 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3611111,643,223 - 111,644,304 (-)NCBINCBI36Build 36hg18NCBI36
Celera11109,291,014 - 109,292,094 (-)NCBICelera
Cytogenetic Map11q23.1NCBI
HuRef11108,065,704 - 108,066,784 (-)NCBIHuRef
CHM1_111112,021,411 - 112,022,491 (-)NCBICHM1_1
T2T-CHM13v2.011112,277,414 - 112,278,772 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:162
Count of miRNA genes:159
Interacting mature miRNAs:162
Transcripts:ENST00000526466
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium
Low 8 11 29 2 160 2 144 5 54 15 24 34 21 101
Below cutoff 1399 1447 1058 340 723 215 3074 1247 1837 194 926 960 129 829 2003 2

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000526466
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl11112,267,290 - 112,268,371 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC ST13P10 COSMIC
Ensembl Genes ENSG00000213234 Ensembl
GTEx ENSG00000213234 GTEx
HGNC ID HGNC:38745 ENTREZGENE
Human Proteome Map ST13P10 Human Proteome Map
NCBI Gene 399950 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-03-07 ST13P10  ST13, Hsp70 interacting protein pseudogene 10    suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein) pseudogene 10  Symbol and/or name change 5135510 APPROVED