LOC120099406 (U6 spliceosomal RNA) - Rat Genome Database

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Gene: LOC120099406 (U6 spliceosomal RNA) Rattus norvegicus
Analyze
Symbol: LOC120099406
Name: U6 spliceosomal RNA
RGD ID: 41355427
Description:
Type: snrna
RefSeq Status: MODEL
RGD Orthologs
Human
Dog
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X7,313,297 - 7,313,399 (-)NCBIGRCr8
mRatBN7.2X4,730,257 - 4,730,359 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX4,730,257 - 4,730,359 (-)EnsemblmRatBN7.2 Ensembl
Cytogenetic MapXq11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
LOC120099406
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X7,313,297 - 7,313,399 (-)NCBIGRCr8
mRatBN7.2X4,730,257 - 4,730,359 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX4,730,257 - 4,730,359 (-)EnsemblmRatBN7.2 Ensembl
Cytogenetic MapXq11NCBI
RNU6-89P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381202,410,108 - 202,410,207 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1202,410,108 - 202,410,207 (-)EnsemblGRCh38hg38GRCh38
GRCh371202,379,236 - 202,379,335 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map1q32.1NCBI
CHM1_11203,801,174 - 203,801,273 (-)NCBICHM1_1
T2T-CHM13v2.01201,672,173 - 201,672,272 (-)NCBIT2T-CHM13v2.0
LOC119869842
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha1112,938,266 - 112,938,374 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01114,134,667 - 114,134,775 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1114,134,667 - 114,134,775 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11113,693,605 - 113,693,713 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01113,326,385 - 113,326,493 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01114,320,445 - 114,320,553 (+)NCBIUU_Cfam_GSD_1.0


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
731181Uae27Urinary albumin excretion QTL 272.70.0059urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)X143491017Rat
70166Bp65Blood pressure QTL 655.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)X144797211374346Rat
634325Bw13Body weight QTL 130body mass (VT:0001259)body weight (CMO:0000012)X144797220991088Rat
70165Bp64Blood pressure QTL 645.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)X144812931706553Rat
631204Gluco15Glucose level QTL 150.001blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)X162371522646544Rat
1298071Edpm12Estrogen-dependent pituitary mass QTL 123.2pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)X292789847927898Rat
10755455Coatc13Coat color QTL 130coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)7440600049406000Rat
631666Iddm5Insulin dependent diabetes mellitus QTL 5blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)X449454949494549Rat


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_005498596 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000021 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000079771
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 EnsemblX4,730,257 - 4,730,359 (-)Ensembl
RefSeq Acc Id: XR_005498596
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X7,313,297 - 7,313,399 (-)NCBI
mRatBN7.2X4,730,257 - 4,730,359 (-)NCBI
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-3126 BioCyc
Ensembl Genes ENSRNOG00000062498 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000079771 ENTREZGENE
NCBI Gene LOC120099406 ENTREZGENE
PhenoGen LOC120099406 PhenoGen
RatGTEx ENSRNOG00000062498 RatGTEx


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-01-27 LOC120099406  U6 spliceosomal RNA      Symbol and Name status set to provisional 70820 PROVISIONAL