Rnu6-884 (RNA, U6 small nuclear 884) - Rat Genome Database

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Gene: Rnu6-884 (RNA, U6 small nuclear 884) Rattus norvegicus
Analyze
Symbol: Rnu6-884
Name: RNA, U6 small nuclear 884
RGD ID: 41326680
Description:
Type: snrna
RefSeq Status: MODEL
Previously known as: LOC120100187; U6; U6 spliceosomal RNA
RGD Orthologs
Human
Mouse
Dog
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr814,876,581 - 4,876,685 (+)NCBIGRCr8
mRatBN7.213,056,287 - 3,056,391 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl13,056,287 - 3,056,391 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl12,720,299 - 2,720,403 (+)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map1p13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
Rnu6-884
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr814,876,581 - 4,876,685 (+)NCBIGRCr8
mRatBN7.213,056,287 - 3,056,391 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl13,056,287 - 3,056,391 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl12,720,299 - 2,720,403 (+)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map1p13NCBI
RNU6-884P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381151,022,746 - 151,022,852 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1151,022,746 - 151,022,852 (-)EnsemblGRCh38hg38GRCh38
GRCh371150,995,222 - 150,995,328 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map1q21.3NCBI
CHM1_11152,390,532 - 152,390,638 (-)NCBICHM1_1
T2T-CHM13v2.01150,146,438 - 150,146,544 (-)NCBIT2T-CHM13v2.0
Gm22226
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39796,569,201 - 96,569,309 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl796,569,201 - 96,569,309 (-)EnsemblGRCm39 Ensembl
GRCm38796,919,994 - 96,920,102 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl796,919,994 - 96,920,102 (-)EnsemblGRCm38mm10GRCm38
Cytogenetic Map7E1NCBI
LOC119867872
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha3615,438,087 - 15,438,192 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03615,550,422 - 15,550,527 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3615,550,422 - 15,550,527 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13615,639,353 - 15,639,458 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03615,626,681 - 15,626,786 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03615,738,949 - 15,739,054 (+)NCBIUU_Cfam_GSD_1.0


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354647Despr8Despair related QTL 80.0000341locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)1124744506Rat
2298546Neuinf4Neuroinflammation QTL 45.1nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)1128736750Rat
2313053Bss51Bone structure and strength QTL 513.80.0001tibia length (VT:0004357)tibia length (CMO:0000450)1132356093Rat
2313070Bss52Bone structure and strength QTL 524.40.0001body length (VT:0001256)body length (CMO:0000013)1132356093Rat
2313090Bmd69Bone mineral density QTL 694.40.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)1132356093Rat
738020Pia8Pristane induced arthritis QTL 84.7joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1165833076Rat
1578650Bmd6Bone mineral density QTL 612.2femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)150910843284926Rat
1578651Bmd7Bone mineral density QTL 714.2femur mineral mass (VT:0010011)compact volumetric bone mineral density (CMO:0001730)150910843284926Rat
1578669Bss9Bone structure and strength QTL 96.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)150910843284926Rat
1554320Bmd1Bone mineral density QTL 112.20.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)150910886060548Rat
1600360Mcs16Mammary carcinoma susceptibility QTL 162.4mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)1224439043433040Rat


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_005499973 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000080492
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl13,056,287 - 3,056,391 (+)Ensembl
RefSeq Acc Id: XR_005499973
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr814,876,581 - 4,876,685 (+)NCBI
mRatBN7.213,056,287 - 3,056,391 (+)NCBI
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-62432 BioCyc
Ensembl Genes ENSRNOG00000054005 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000080492 ENTREZGENE
NCBI Gene LOC120100187 ENTREZGENE
PhenoGen Rnu6-884 PhenoGen
RatGTEx ENSRNOG00000054005 RatGTEx


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-07-07 Rnu6-884  RNA, U6 small nuclear 884  LOC120100187  U6 spliceosomal RNA  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2022-06-02 LOC120100187  U6 spliceosomal RNA  U6  U6 spliceosomal RNA  Data merged from RGD:15008353 737654 PROVISIONAL
2021-01-27 LOC120100187  U6 spliceosomal RNA      Symbol and Name status set to provisional 70820 PROVISIONAL
2019-11-08 U6  U6 spliceosomal RNA      Symbol and Name status set to provisional 45752 PROVISIONAL