LOC120099435 (U7 small nuclear RNA) - Rat Genome Database

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Gene: LOC120099435 (U7 small nuclear RNA) Rattus norvegicus
Analyze
Symbol: LOC120099435
Name: U7 small nuclear RNA
RGD ID: 41314102
Description:
Type: snrna
RefSeq Status: MODEL
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X92,869,157 - 92,869,215 (+)NCBIGRCr8
mRatBN7.2X88,609,126 - 88,609,184 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX88,609,126 - 88,609,184 (+)EnsemblmRatBN7.2 Ensembl
Cytogenetic MapXq31NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61430Cia18Collagen induced arthritis QTL 183.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)X14843113120568734Rat
1598837Memor13Memory QTL 133.2exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X41052407146860749Rat
738035Stresp1Stress response QTL 14.960.000011stress-related behavior trait (VT:0010451)defensive burying - copingX41304447112935181Rat
61431Cia19Collagen induced arthritis QTL 194.4joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)X65612192120568734Rat
724551Glom1Glomerulus QTL 12.80.0004kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)X75294106120294106Rat


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_005498618 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000021 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000111126
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 EnsemblX88,609,126 - 88,609,184 (+)Ensembl
RefSeq Acc Id: XR_005498618
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X92,869,157 - 92,869,215 (+)NCBI
mRatBN7.2X88,609,126 - 88,609,184 (+)NCBI
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-1754 BioCyc
Ensembl Genes ENSRNOG00000069728 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000111126 ENTREZGENE
NCBI Gene LOC120099435 ENTREZGENE
PhenoGen LOC120099435 PhenoGen
RatGTEx ENSRNOG00000069728 RatGTEx


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-01-27 LOC120099435  U7 small nuclear RNA      Symbol and Name status set to provisional 70820 PROVISIONAL