LOC120099430 (U6 spliceosomal RNA) - Rat Genome Database

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Gene: LOC120099430 (U6 spliceosomal RNA) Rattus norvegicus
Analyze
Symbol: LOC120099430
Name: U6 spliceosomal RNA
RGD ID: 41224812
Description:
Type: snrna
RefSeq Status: MODEL
Previously known as: U6
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X5,781,440 - 5,781,543 (-)NCBIGRCr8
mRatBN7.2X3,181,352 - 3,181,455 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX3,181,352 - 3,181,455 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 EnsemblX3,465,575 - 3,465,684 (-)NCBIRnor6.0rn6Rnor6.0
Cytogenetic MapXq11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
731181Uae27Urinary albumin excretion QTL 272.70.0059urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)X143491017Rat
70166Bp65Blood pressure QTL 655.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)X144797211374346Rat
634325Bw13Body weight QTL 130body mass (VT:0001259)body weight (CMO:0000012)X144797220991088Rat
70165Bp64Blood pressure QTL 645.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)X144812931706553Rat
631204Gluco15Glucose level QTL 150.001blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)X162371522646544Rat
1298071Edpm12Estrogen-dependent pituitary mass QTL 123.2pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)X292789847927898Rat


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_005498614 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000021 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000089691
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 EnsemblX3,181,352 - 3,181,455 (-)Ensembl
RefSeq Acc Id: XR_005498614
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X5,781,440 - 5,781,543 (-)NCBI
mRatBN7.2X3,181,352 - 3,181,455 (-)NCBI
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-3162 BioCyc
Ensembl Genes ENSRNOG00000057374 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000089691 ENTREZGENE
NCBI Gene LOC120099430 ENTREZGENE
PhenoGen LOC120099430 PhenoGen
RatGTEx ENSRNOG00000057374 RatGTEx


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-02 LOC120099430  U6 spliceosomal RNA  U6  U6 spliceosomal RNA  Data merged from RGD:15010961 737654 PROVISIONAL
2021-01-27 LOC120099430  U6 spliceosomal RNA      Symbol and Name status set to provisional 70820 PROVISIONAL
2019-11-08 U6  U6 spliceosomal RNA      Symbol and Name status set to provisional 45752 PROVISIONAL