LOC120099425 (U1 spliceosomal RNA) - Rat Genome Database

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Gene: LOC120099425 (U1 spliceosomal RNA) Rattus norvegicus
Analyze
Symbol: LOC120099425
Name: U1 spliceosomal RNA
RGD ID: 41207347
Description:
Type: snrna
RefSeq Status: MODEL
Previously known as: U1
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X73,727,964 - 73,728,127 (-)NCBIGRCr8
mRatBN7.2X69,662,273 - 69,662,436 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX69,662,273 - 69,662,436 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 EnsemblX75,528,920 - 75,529,083 (-)NCBIRnor6.0rn6Rnor6.0
Cytogenetic MapXq22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61430Cia18Collagen induced arthritis QTL 183.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)X14843113120568734Rat
1598837Memor13Memory QTL 133.2exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X41052407146860749Rat
738035Stresp1Stress response QTL 14.960.000011stress-related behavior trait (VT:0010451)defensive burying - copingX41304447112935181Rat
61431Cia19Collagen induced arthritis QTL 194.4joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)X65612192120568734Rat


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_005498610 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000021 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000090191
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 EnsemblX69,662,273 - 69,662,436 (-)Ensembl
RefSeq Acc Id: XR_005498610
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X73,727,964 - 73,728,127 (-)NCBI
mRatBN7.2X69,662,273 - 69,662,436 (-)NCBI
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-1982 BioCyc
Ensembl Genes ENSRNOG00000058253 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000090191 ENTREZGENE
NCBI Gene LOC120099425 ENTREZGENE
PhenoGen LOC120099425 PhenoGen
RatGTEx ENSRNOG00000058253 RatGTEx


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-02 LOC120099425  U1 spliceosomal RNA  U1  U1 spliceosomal RNA  Data merged from RGD:15011645 737654 PROVISIONAL
2021-01-27 LOC120099425  U1 spliceosomal RNA      Symbol and Name status set to provisional 70820 PROVISIONAL
2019-11-08 U1  U1 spliceosomal RNA      Symbol and Name status set to provisional 45752 PROVISIONAL