LOC120096563 (cytochrome c oxidase assembly protein COX20, mitochondrial-like) - Rat Genome Database

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Gene: LOC120096563 (cytochrome c oxidase assembly protein COX20, mitochondrial-like) Rattus norvegicus
Analyze
No known orthologs.
Symbol: LOC120096563
Name: cytochrome c oxidase assembly protein COX20, mitochondrial-like
RGD ID: 41199361
Description: Predicted to be involved in mitochondrial cytochrome c oxidase assembly. Predicted to be located in mitochondrial inner membrane.
Type: pseudo (Ensembl: protein-coding)
RefSeq Status: MODEL
Previously known as: AABR07014301.2
RGD Orthologs
Alliance Genes
More Info homologs ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8146,872,278 - 6,872,652 (-)NCBIGRCr8
mRatBN7.2146,567,733 - 6,568,059 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl146,567,733 - 6,568,056 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl148,149,864 - 8,150,210 (-)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map14p22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References

Genomics

Variants

.
Variants in LOC120096563
4 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2300159Bmd61Bone mineral density QTL 615.30.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)14126541967Rat
2300183Bmd60Bone mineral density QTL 605.70.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)14126541967Rat
619619Rf4Renal disease susceptibility QTL 44.10.002urine total protein amount (VT:0000032)urine protein excretion rate to body weight ratio (CMO:0001099)14132754612Rat
634352Apr6Acute phase response QTL 63.7blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)14141131407Rat
71115Niddm15Non-insulin dependent diabetes mellitus QTL 154.8blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)14121760611030812Rat
70204Niddm20Non-insulin dependent diabetes mellitus QTL 205.10.000008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)14121760616960180Rat
724541Niddm53Non-insulin dependent diabetes mellitus QTL 530.001blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1438130749088978Rat
2293089Iddm31Insulin dependent diabetes mellitus QTL 314.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)14381307418274691Rat
2293089Iddm31Insulin dependent diabetes mellitus QTL 314.7blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)14381307418274691Rat
1300114Srn2Serum renin concentration QTL 23.27blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)14381307421217635Rat
70195Mcs8Mammary carcinoma susceptibility QTL 84.28mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)14381307424531477Rat
1331740Bw26Body weight QTL 263.028body mass (VT:0001259)body weight (CMO:0000012)14381307430767156Rat


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_039092645 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000014 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000074231   ⟹   ENSRNOP00000081441
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl146,567,733 - 6,568,056 (-)Ensembl
RefSeq Acc Id: XM_039092645   ⟹   XP_038948573
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2146,567,733 - 6,568,059 (-)NCBI
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-16468 BioCyc
Ensembl Genes ENSRNOG00000050982 Ensembl, ENTREZGENE
NCBI Gene LOC120096563 ENTREZGENE
PhenoGen LOC120096563 PhenoGen
RatGTEx ENSRNOG00000050982 RatGTEx


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-02 LOC120096563  cytochrome c oxidase assembly protein COX20, mitochondrial-like  AABR07014301.2    Data merged from RGD:15006089 737654 PROVISIONAL
2021-01-27 LOC120096563  cytochrome c oxidase assembly protein COX20, mitochondrial-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2019-11-08 AABR07014301.2        Symbol and Name status set to provisional 45752 PROVISIONAL