LOC120099485 (small nucleolar RNA SNORA17) - Rat Genome Database

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Gene: LOC120099485 (small nucleolar RNA SNORA17) Rattus norvegicus
Analyze
Symbol: LOC120099485
Name: small nucleolar RNA SNORA17
RGD ID: 41137287
Description:
Type: snorna
RefSeq Status: MODEL
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X33,829,095 - 33,829,226 (-)NCBIGRCr8
mRatBN7.2X30,197,215 - 30,197,346 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX30,197,215 - 30,197,346 (-)EnsemblmRatBN7.2 Ensembl
Cytogenetic MapXq14NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in LOC120099485
1 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
731181Uae27Urinary albumin excretion QTL 272.70.0059urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)X143491017Rat
70165Bp64Blood pressure QTL 645.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)X144812931706553Rat
1298071Edpm12Estrogen-dependent pituitary mass QTL 123.2pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)X292789847927898Rat
10755455Coatc13Coat color QTL 130coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)7440600049406000Rat
631666Iddm5Insulin dependent diabetes mellitus QTL 5blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)X449454949494549Rat
61430Cia18Collagen induced arthritis QTL 183.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)X14843113120568734Rat
71116Niddm16Non-insulin dependent diabetes mellitus QTL 167.81blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)X1529780260297802Rat
1598873Memor2Memory QTL 22.5exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)X2099094741052531Rat
2290375Gluco34Glucose level QTL 342.75blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)X2099094741203591Rat


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_005498656 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000021 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000103413
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 EnsemblX30,197,215 - 30,197,346 (-)Ensembl
RefSeq Acc Id: XR_005498656
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X33,829,095 - 33,829,226 (-)NCBI
mRatBN7.2X30,197,215 - 30,197,346 (-)NCBI
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-2589 BioCyc
Ensembl Genes ENSRNOG00000068049 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000103413 ENTREZGENE
NCBI Gene LOC120099485 ENTREZGENE
PhenoGen LOC120099485 PhenoGen
RatGTEx ENSRNOG00000068049 RatGTEx


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-01-27 LOC120099485  small nucleolar RNA SNORA17      Symbol and Name status set to provisional 70820 PROVISIONAL