TOMM22P1 (TOMM22 pseudogene 1) - Rat Genome Database

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Gene: TOMM22P1 (TOMM22 pseudogene 1) Homo sapiens
Analyze
Symbol: TOMM22P1
Name: TOMM22 pseudogene 1
RGD ID: 4110022
HGNC Page HGNC:38736
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Related Functional Gene: TOMM22  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38Y21,130,870 - 21,131,181 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblY21,130,870 - 21,131,181 (+)EnsemblGRCh38hg38GRCh38
GRCh37Y23,292,756 - 23,293,067 (+)NCBIGRCh37GRCh37hg19GRCh37
CeleraY7,988,980 - 7,989,291 (+)NCBICelera
Cytogenetic MapYq11.223NCBI
HuRefY16,872,846 - 16,873,157 (+)NCBIHuRef
T2T-CHM13v2.0Y22,006,128 - 22,006,439 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:9847074  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:137
Count of miRNA genes:133
Interacting mature miRNAs:137
Transcripts:ENST00000418578
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium 5
Low 4 4 3 48 1 1 3 3 2
Below cutoff 43 64 17 6 134 5 35 7 8 22 56 33 1 7 15

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000418578
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 EnsemblY21,130,870 - 21,131,181 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC TOMM22P1 COSMIC
Ensembl Genes ENSG00000237427 Ensembl, ENTREZGENE
GTEx ENSG00000237427 GTEx
HGNC ID HGNC:38736 ENTREZGENE
Human Proteome Map TOMM22P1 Human Proteome Map
NCBI Gene 100499416 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2014-12-23 TOMM22P1  TOMM22 pseudogene 1    translocase of outer mitochondrial membrane 22 homolog (yeast) pseudogene 1  Symbol and/or name change 5135510 APPROVED