LOC120100351 (small nucleolar RNA SNORA31) - Rat Genome Database

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Gene: LOC120100351 (small nucleolar RNA SNORA31) Rattus norvegicus
Analyze
Symbol: LOC120100351
Name: small nucleolar RNA SNORA31
RGD ID: 41091704
Description:
Type: snorna
RefSeq Status: MODEL
Previously known as: AABR07000247.1
RGD Orthologs
Human
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr818,128,572 - 8,128,698 (+)NCBIGRCr8
mRatBN7.216,308,354 - 6,308,480 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl16,308,354 - 6,308,480 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl16,038,601 - 6,038,727 (+)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map1p13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
LOC120100351
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr818,128,572 - 8,128,698 (+)NCBIGRCr8
mRatBN7.216,308,354 - 6,308,480 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl16,308,354 - 6,308,480 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl16,038,601 - 6,038,727 (+)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map1p13NCBI
LOC124900397
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381719,662,000 - 19,662,090 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1719,662,000 - 19,662,090 (+)EnsemblGRCh38hg38GRCh38
Cytogenetic Map17p11.2NCBI
T2T-CHM13v2.01719,610,615 - 19,610,705 (+)NCBIT2T-CHM13v2.0


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354647Despr8Despair related QTL 80.0000341locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)1124744506Rat
2298546Neuinf4Neuroinflammation QTL 45.1nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)1128736750Rat
2313053Bss51Bone structure and strength QTL 513.80.0001tibia length (VT:0004357)tibia length (CMO:0000450)1132356093Rat
2313070Bss52Bone structure and strength QTL 524.40.0001body length (VT:0001256)body length (CMO:0000013)1132356093Rat
2313090Bmd69Bone mineral density QTL 694.40.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)1132356093Rat
738020Pia8Pristane induced arthritis QTL 84.7joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1165833076Rat
1578650Bmd6Bone mineral density QTL 612.2femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)150910843284926Rat
1578651Bmd7Bone mineral density QTL 714.2femur mineral mass (VT:0010011)compact volumetric bone mineral density (CMO:0001730)150910843284926Rat
1578669Bss9Bone structure and strength QTL 96.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)150910843284926Rat
1554320Bmd1Bone mineral density QTL 112.20.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)150910886060548Rat
1600360Mcs16Mammary carcinoma susceptibility QTL 162.4mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)1224439043433040Rat
1300170Rf6Renal function QTL 63.14renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)1416280711481482Rat
7421626Bp360Blood pressure QTL 3600.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1439328949393289Rat
631688Hcas2Hepatocarcinoma susceptibility QTL 230.0001liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)15925874115540829Rat
4889451Eae29Experimental allergic encephalomyelitis QTL 295.51nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)1592587724697545Rat


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_005500119 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000082128
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl16,308,354 - 6,308,480 (+)Ensembl
RefSeq Acc Id: XR_005500119
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr818,128,572 - 8,128,698 (+)NCBI
mRatBN7.216,308,354 - 6,308,480 (+)NCBI
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-62386 BioCyc
Ensembl Genes ENSRNOG00000058048 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000082128 ENTREZGENE
NCBI Gene LOC120100351 ENTREZGENE
PhenoGen LOC120100351 PhenoGen
RatGTEx ENSRNOG00000058048 RatGTEx


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-02 LOC120100351  small nucleolar RNA SNORA31  AABR07000247.1    Data merged from RGD:15011481 737654 PROVISIONAL
2021-01-27 LOC120100351  small nucleolar RNA SNORA31      Symbol and Name status set to provisional 70820 PROVISIONAL
2019-11-08 AABR07000247.1        Symbol and Name status set to provisional 45752 PROVISIONAL