ELOCP15 (elongin C pseudogene 15) - Rat Genome Database

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Gene: ELOCP15 (elongin C pseudogene 15) Homo sapiens
Analyze
Symbol: ELOCP15
Name: elongin C pseudogene 15
RGD ID: 4108630
HGNC Page HGNC:38151
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: TCEB1P15; transcription elongation factor B subunit 1 pseudogene 15
Related Functional Gene: ELOC  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38Y22,068,820 - 22,069,151 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblY22,068,820 - 22,069,151 (+)EnsemblGRCh38hg38GRCh38
GRCh37Y24,214,967 - 24,215,298 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic MapYq11.223NCBI
T2T-CHM13v2.0Y23,352,892 - 23,353,223 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:202
Count of miRNA genes:194
Interacting mature miRNAs:199
Transcripts:ENST00000442090
Prediction methods:Miranda, Pita, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system hemolymphoid system reproductive system
High
Medium
Low
Below cutoff 7 2 1

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000442090
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 EnsemblY22,068,820 - 22,069,151 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC ELOCP15 COSMIC
Ensembl Genes ENSG00000232029 Ensembl, ENTREZGENE
GTEx ENSG00000232029 GTEx
HGNC ID HGNC:38151 ENTREZGENE
Human Proteome Map ELOCP15 Human Proteome Map
NCBI Gene 100462877 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-11-08 ELOCP15  elongin C pseudogene 15  TCEB1P15  transcription elongation factor B subunit 1 pseudogene 15  Symbol and/or name change 5135510 APPROVED
2016-03-14 TCEB1P15  transcription elongation factor B subunit 1 pseudogene 15    transcription elongation factor B (SIII), polypeptide 1 pseudogene 15  Symbol and/or name change 5135510 APPROVED