ZNF663P (zinc finger protein 663, pseudogene) - Rat Genome Database

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Gene: ZNF663P (zinc finger protein 663, pseudogene) Homo sapiens
Analyze
Symbol: ZNF663P
Name: zinc finger protein 663, pseudogene
RGD ID: 4107144
HGNC Page HGNC:25342
Description: INTERACTS WITH benzo[a]pyrene (ortholog); bisphenol A (ortholog); carbon nanotube (ortholog)
Type: pseudo (Ensembl: transcribed_unitary_pseudogene)
RefSeq Status: PROVISIONAL
Previously known as: DKFZp547G0215; MGC118776; ZNF663
RGD Orthologs
Mouse
Alliance Orthologs
More Info more info ...
Related Functional Gene: ZNF33A  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382046,456,493 - 46,457,643 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2046,455,955 - 46,457,085 (-)EnsemblGRCh38hg38GRCh38
GRCh372045,085,132 - 45,086,282 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362044,518,739 - 44,521,536 (-)NCBINCBI36Build 36hg18NCBI36
Celera2041,796,547 - 41,797,698 (-)NCBICelera
Cytogenetic Map20q13.12NCBI
HuRef2041,826,038 - 41,827,188 (-)NCBIHuRef
CHM1_12044,987,739 - 44,988,889 (-)NCBICHM1_1
T2T-CHM13v2.02048,192,597 - 48,193,751 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:11181995   PMID:12477932   PMID:15489334  


Genomics

Comparative Map Data
ZNF663P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382046,456,493 - 46,457,643 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2046,455,955 - 46,457,085 (-)EnsemblGRCh38hg38GRCh38
GRCh372045,085,132 - 45,086,282 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362044,518,739 - 44,521,536 (-)NCBINCBI36Build 36hg18NCBI36
Celera2041,796,547 - 41,797,698 (-)NCBICelera
Cytogenetic Map20q13.12NCBI
HuRef2041,826,038 - 41,827,188 (-)NCBIHuRef
CHM1_12044,987,739 - 44,988,889 (-)NCBICHM1_1
T2T-CHM13v2.02048,192,597 - 48,193,751 (-)NCBIT2T-CHM13v2.0
Zfp663
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392165,193,217 - 165,210,656 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2165,193,217 - 165,210,649 (-)EnsemblGRCm39 Ensembl
GRCm382165,351,297 - 165,368,736 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2165,351,297 - 165,368,729 (-)EnsemblGRCm38mm10GRCm38
MGSCv372165,176,797 - 165,187,619 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362165,042,502 - 165,053,324 (-)NCBIMGSCv36mm8
Celera2171,293,656 - 171,304,478 (-)NCBICelera
Cytogenetic Map2H3NCBI
cM Map285.53NCBI

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:233
Count of miRNA genes:217
Interacting mature miRNAs:225
Transcripts:ENST00000400371, ENST00000472805
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
UniSTS:483018  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372045,085,131 - 45,086,282UniSTSGRCh37
Celera2041,796,547 - 41,797,698UniSTS
HuRef2041,826,037 - 41,827,188UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 7 467 22 3
Low 248 29 1088 116 86 11 661 62 2704 112 1227 846 107 30 438
Below cutoff 2004 2132 450 337 851 287 2950 1790 519 218 131 591 53 994 1895 3

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000400371
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2046,414,228 - 46,459,276 (-)Ensembl
RefSeq Acc Id: ENST00000641770
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2046,455,955 - 46,457,085 (-)Ensembl
RefSeq Acc Id: NR_045983
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382046,456,493 - 46,457,643 (-)NCBI
HuRef2041,826,038 - 41,827,188 (-)NCBI
CHM1_12044,987,739 - 44,988,889 (-)NCBI
T2T-CHM13v2.02048,192,597 - 48,193,751 (-)NCBI
Sequence:
Protein Sequences
GenBank Protein CAD38590 (Get FASTA)   NCBI Sequence Viewer  
  EAW75737 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences


Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:25342 AgrOrtholog
COSMIC ZNF663P COSMIC
Ensembl Genes ENSG00000215452 Ensembl
GTEx ENSG00000215452 GTEx
HGNC ID HGNC:25342 ENTREZGENE
Human Proteome Map ZNF663P Human Proteome Map
NCBI Gene 100130934 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-10-22 ZNF663P  zinc finger protein 663, pseudogene  ZNF663  zinc finger protein 663  Symbol and/or name change 5135510 APPROVED