Rnu6-1297 (RNA, U6 small nuclear 1297) - Rat Genome Database

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Gene: Rnu6-1297 (RNA, U6 small nuclear 1297) Rattus norvegicus
Analyze
Symbol: Rnu6-1297
Name: RNA, U6 small nuclear 1297
RGD ID: 40943670
Description:
Type: pseudo (Ensembl: snRNA)
RefSeq Status: MODEL
Previously known as: LOC120103212; U6; U6 spliceosomal RNA
RGD Orthologs
Human
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8514,009,190 - 14,009,290 (+)NCBIGRCr8
mRatBN7.259,226,301 - 9,226,401 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl59,226,301 - 9,226,401 (+)EnsemblmRatBN7.2 Ensembl
Cytogenetic Map5q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
Rnu6-1297
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8514,009,190 - 14,009,290 (+)NCBIGRCr8
mRatBN7.259,226,301 - 9,226,401 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl59,226,301 - 9,226,401 (+)EnsemblmRatBN7.2 Ensembl
Cytogenetic Map5q11NCBI
RNU6-579P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382133,333,829 - 133,333,930 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2133,333,829 - 133,333,930 (+)EnsemblGRCh38hg38GRCh38
GRCh372134,091,401 - 134,091,502 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map2q21.2NCBI
CHM1_12134,096,849 - 134,096,950 (+)NCBICHM1_1
T2T-CHM13v2.02133,772,468 - 133,772,569 (+)NCBIT2T-CHM13v2.0

Variants

.
Variants in Rnu6-1297
1 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1331756Rf34Renal function QTL 344.16275kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)5190450412Rat
70212Niddm25Non-insulin dependent diabetes mellitus QTL 253.54blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)51131345958Rat
1331771Rf35Renal function QTL 354.36965kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)572947086724018Rat
2312562Pur18Proteinuria QTL 182.60.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)5213896532656739Rat
1576314Eutr1Estrogen induced uterine response QTL 1uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)52138965166875058Rat
8662454Vetf3Vascular elastic tissue fragility QTL 327.4artery integrity trait (VT:0010639)number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)5228222669540447Rat
2313085Bss59Bone structure and strength QTL 592.90.0001long bone metaphysis morphology trait (VT:0000133)tibia midshaft total cross-sectional area (CMO:0001715)5384401826141981Rat
1300117Hrtrt8Heart rate QTL 83.49heart pumping trait (VT:2000009)heart rate (CMO:0000002)5384401847869213Rat
61462Niddm10Non-insulin dependent diabetes mellitus QTL 103.90.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)5511215947171491Rat
631827Alc4Alcohol consumption QTL 43.5consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)5818750118616199Rat
2293666Bmd38Bone mineral density QTL 384.4femur size trait (VT:1000369)femoral neck cortical cross-sectional area (CMO:0001702)5894822853948228Rat


Expression


Sequence

Nucleotide Sequences
GenBank Nucleotide JAXUCZ010000005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000119181
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl59,226,301 - 9,226,401 (+)Ensembl
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-42209 BioCyc
Ensembl Genes ENSRNOG00000069731 Ensembl, ENTREZGENE
NCBI Gene LOC120103212 ENTREZGENE
PhenoGen Rnu6-1297 PhenoGen
RatGTEx ENSRNOG00000069731 RatGTEx


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-17 Rnu6-1297  RNA, U6 small nuclear 1297  LOC120103212  U6 spliceosomal RNA  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2022-05-26 LOC120103212  U6 spliceosomal RNA  U6  U6 spliceosomal RNA  Data merged from RGD:150343597 737654 PROVISIONAL
2021-08-31 U6  U6 spliceosomal RNA      Symbol and Name status set to provisional 45752 PROVISIONAL
2021-01-26 LOC120103212  U6 spliceosomal RNA      Symbol and Name status set to provisional 70820 PROVISIONAL