CXCL11 (C-X-C motif chemokine ligand 11) - Rat Genome Database

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Gene: CXCL11 (C-X-C motif chemokine ligand 11) Canis lupus familiaris
Analyze
Symbol: CXCL11
Name: C-X-C motif chemokine ligand 11
RGD ID: 40916135
Description: ENCODES a protein that exhibits chemokine activity (ortholog); CXCR3 chemokine receptor binding (ortholog); heparin binding (ortholog); INVOLVED IN adenylate cyclase-activating G protein-coupled receptor signaling pathway (ortholog); antimicrobial humoral immune response mediated by antimicrobial peptide (ortholog); chemokine-mediated signaling pathway (ortholog); ASSOCIATED WITH bacterial pneumonia (ortholog); bronchiolitis obliterans (ortholog); celiac disease (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: C-X-C motif chemokine 11; chemokine (C-X-C motif) ligand 11
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.132631,084 - 636,997 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl32631,478 - 632,868 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl32631,478 - 632,868 (-)NCBICanFam3.1canFam3CanFam3.1
ROS_Cfam_1.032655,797 - 662,280 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.132655,531 - 661,573 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.032609,837 - 615,880 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03239,553,718 - 39,589,852 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
CXCL11
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.132631,084 - 636,997 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl32631,478 - 632,868 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl32631,478 - 632,868 (-)NCBICanFam3.1canFam3CanFam3.1
ROS_Cfam_1.032655,797 - 662,280 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.132655,531 - 661,573 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.032609,837 - 615,880 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03239,553,718 - 39,589,852 (+)NCBIUU_Cfam_GSD_1.0
CXCL11
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38476,033,682 - 76,036,070 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl476,033,682 - 76,041,415 (-)EnsemblGRCh38hg38GRCh38
GRCh37476,954,835 - 76,957,223 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36477,173,859 - 77,176,257 (-)NCBINCBI36Build 36hg18NCBI36
Build 34477,312,020 - 77,314,412NCBI
Celera474,255,322 - 74,257,722 (-)NCBICelera
Cytogenetic Map4q21.1NCBI
HuRef472,707,280 - 72,709,795 (-)NCBIHuRef
CHM1_1476,931,383 - 76,933,900 (-)NCBICHM1_1
T2T-CHM13v2.0479,374,343 - 79,376,731 (-)NCBIT2T-CHM13v2.0
Cxcl11
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39592,507,403 - 92,511,155 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl592,507,403 - 92,513,344 (-)EnsemblGRCm39 Ensembl
GRCm38592,359,544 - 92,363,296 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl592,359,544 - 92,365,485 (-)EnsemblGRCm38mm10GRCm38
MGSCv37592,788,570 - 92,792,303 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36593,434,744 - 93,438,477 (-)NCBIMGSCv36mm8
Celera590,503,193 - 90,506,930 (-)NCBICelera
Cytogenetic Map5E2NCBI
cM Map546.61NCBI
Cxcl11
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81415,973,728 - 15,976,503 (+)NCBIGRCr8
mRatBN7.21415,689,432 - 15,692,207 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1415,689,424 - 15,692,271 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1415,697,639 - 15,700,419 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01417,016,484 - 17,019,264 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01415,711,911 - 15,714,691 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01417,195,395 - 17,198,170 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1417,195,014 - 17,198,291 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01417,111,527 - 17,114,302 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41417,250,648 - 17,253,423 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11417,250,647 - 17,253,423 (+)NCBI
Celera1415,083,879 - 15,086,654 (+)NCBICelera
Cytogenetic Map14p22NCBI
Cxcl11
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955433766,272 - 771,231 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955433769,449 - 771,137 (-)NCBIChiLan1.0ChiLan1.0
CXCL11
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2354,037,310 - 54,039,639 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1454,227,065 - 54,229,394 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0448,169,954 - 48,172,455 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1454,007,818 - 54,010,343 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl454,007,818 - 54,010,336 (+)Ensemblpanpan1.1panPan2
Cxcl11
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528511,433,511 - 11,435,471 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493667671,667 - 73,738 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493667672,383 - 73,697 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CXCL11
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl871,713,803 - 71,725,674 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1871,713,790 - 71,725,669 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2875,909,581 - 75,921,427 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CXCL11
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1724,540,401 - 24,543,456 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl724,541,767 - 24,542,832 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660372,882,698 - 2,885,219 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cxcl11
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475714,952,851 - 14,954,905 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475714,952,966 - 14,954,343 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in CXCL11
100 total Variants

Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCAFT00000070268   ⟹   ENSCAFP00000055313
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl32631,478 - 632,868 (-)Ensembl
RefSeq Acc Id: XM_038444537   ⟹   XP_038300465
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.032655,797 - 662,280 (-)NCBI
RefSeq Acc Id: XM_038518953   ⟹   XP_038374881
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.132655,531 - 661,573 (-)NCBI
RefSeq Acc Id: XM_038582464   ⟹   XP_038438392
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.03239,553,718 - 39,589,852 (+)NCBI
RefSeq Acc Id: XM_038646873   ⟹   XP_038502801
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.032609,837 - 615,880 (-)NCBI
Protein Sequences
Protein RefSeqs XP_038300465 (Get FASTA)   NCBI Sequence Viewer  
  XP_038374881 (Get FASTA)   NCBI Sequence Viewer  
  XP_038438392 (Get FASTA)   NCBI Sequence Viewer  
  XP_038502801 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: ENSCAFP00000055313   ⟸   ENSCAFT00000070268
RefSeq Acc Id: XP_038374881   ⟸   XM_038518953
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038502801   ⟸   XM_038646873
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038300465   ⟸   XM_038444537
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038438392   ⟸   XM_038582464
- Peptide Label: isoform X4


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000045518 Ensembl
NCBI Gene CXCL11 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-01-14 CXCL11  C-X-C motif chemokine ligand 11  CXCL11  C-X-C motif chemokine ligand 11  Data merged from RGD:12238450 737654 PROVISIONAL