LOC119868428 (ferritin light chain-like) - Rat Genome Database

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Gene: LOC119868428 (ferritin light chain-like) Canis lupus familiaris
Analyze
No known orthologs.
Symbol: LOC119868428
Name: ferritin light chain-like
RGD ID: 40913678
Description: ENCODES a protein that exhibits ferric iron binding (inferred); ferrous iron binding (inferred); metal ion binding (inferred); INVOLVED IN intracellular iron ion homeostasis (inferred); intracellular sequestering of iron ion (inferred); iron ion transport (inferred); FOUND IN cytoplasm (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: uncharacterized protein LOC119868428
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_TashaX20,634,351 - 20,685,926 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X33,277,673 - 33,386,794 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1X33,356,741 - 33,465,793 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X33,328,644 - 33,437,700 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X33,370,494 - 33,479,625 (-)NCBIUU_Cfam_GSD_1.0


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_038449761 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038449762 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038464471 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038523205 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038523206 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038587169 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038587170 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038651686 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038651687 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005309376 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005309377 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005309378 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005352151 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005352152 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005352153 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005386244 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005386245 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005386246 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005420063 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005420064 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005420065 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000146 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000371 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000110 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000175 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000039 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_038449761   ⟹   XP_038305689
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0X33,318,970 - 33,386,794 (-)NCBI
RefSeq Acc Id: XM_038449762   ⟹   XP_038305690
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0X33,318,970 - 33,320,583 (-)NCBI
RefSeq Acc Id: XM_038464471   ⟹   XP_038320399
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_TashaX20,634,351 - 20,685,926 (-)NCBI
RefSeq Acc Id: XM_038523205   ⟹   XP_038379133
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1X33,397,984 - 33,465,793 (-)NCBI
RefSeq Acc Id: XM_038523206   ⟹   XP_038379134
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1X33,397,984 - 33,399,597 (-)NCBI
RefSeq Acc Id: XM_038587169   ⟹   XP_038443097
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0X33,411,805 - 33,479,625 (-)NCBI
RefSeq Acc Id: XM_038587170   ⟹   XP_038443098
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0X33,411,805 - 33,413,418 (-)NCBI
RefSeq Acc Id: XM_038651686   ⟹   XP_038507614
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0X33,369,901 - 33,437,700 (-)NCBI
RefSeq Acc Id: XM_038651687   ⟹   XP_038507615
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0X33,369,901 - 33,371,514 (-)NCBI
RefSeq Acc Id: XR_005309376
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0X33,335,209 - 33,386,641 (-)NCBI
RefSeq Acc Id: XR_005309377
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0X33,335,209 - 33,386,642 (-)NCBI
RefSeq Acc Id: XR_005309378
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0X33,277,673 - 33,386,628 (-)NCBI
RefSeq Acc Id: XR_005352151
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1X33,414,218 - 33,465,618 (-)NCBI
RefSeq Acc Id: XR_005352152
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1X33,414,218 - 33,465,645 (-)NCBI
RefSeq Acc Id: XR_005352153
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1X33,356,741 - 33,465,631 (-)NCBI
RefSeq Acc Id: XR_005386244
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0X33,428,044 - 33,479,459 (-)NCBI
RefSeq Acc Id: XR_005386245
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0X33,428,044 - 33,479,473 (-)NCBI
RefSeq Acc Id: XR_005386246
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0X33,370,494 - 33,479,459 (-)NCBI
RefSeq Acc Id: XR_005420063
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0X33,386,138 - 33,437,521 (-)NCBI
RefSeq Acc Id: XR_005420064
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0X33,386,138 - 33,437,548 (-)NCBI
RefSeq Acc Id: XR_005420065
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0X33,328,644 - 33,437,534 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_038379133   ⟸   XM_038523205
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038379134   ⟸   XM_038523206
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038507614   ⟸   XM_038651686
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038507615   ⟸   XM_038651687
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038305689   ⟸   XM_038449761
- Peptide Label: isoform X1
- UniProtKB: A0A8C0N690 (UniProtKB/TrEMBL),   A0A8I3PRE8 (UniProtKB/TrEMBL),   A0A8C0S136 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038305690   ⟸   XM_038449762
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038320399   ⟸   XM_038464471
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038443097   ⟸   XM_038587169
- Peptide Label: isoform X1
- UniProtKB: A0A8C0N690 (UniProtKB/TrEMBL),   A0A8C0S136 (UniProtKB/TrEMBL),   A0A8I3PRE8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038443098   ⟸   XM_038587170
- Peptide Label: isoform X2
Protein Domains
Ferritin-like diiron


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000056850 UniProtKB/TrEMBL
  ENSCAFG00030011191 UniProtKB/TrEMBL
  ENSCAFG00040008862 UniProtKB/TrEMBL
  ENSCAFG00845025837 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000102782.1 UniProtKB/TrEMBL
  ENSCAFT00030020681.1 UniProtKB/TrEMBL
  ENSCAFT00040016485.1 UniProtKB/TrEMBL
  ENSCAFT00845045574 ENTREZGENE
  ENSCAFT00845045574.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1260.10 UniProtKB/TrEMBL
InterPro Ferritin UniProtKB/TrEMBL
  Ferritin-like UniProtKB/TrEMBL
  Ferritin-like_diiron UniProtKB/TrEMBL
  Ferritin-like_SF UniProtKB/TrEMBL
  Ferritin_DPS_dom UniProtKB/TrEMBL
NCBI Gene LOC119868428 ENTREZGENE
PANTHER FERRITIN UniProtKB/TrEMBL
  PTHR11431 UniProtKB/TrEMBL
Pfam Ferritin UniProtKB/TrEMBL
PROSITE FERRITIN_LIKE UniProtKB/TrEMBL
Superfamily-SCOP SSF47240 UniProtKB/TrEMBL
UniProt A0A8C0N690 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0S136 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3PRE8 ENTREZGENE, UniProtKB/TrEMBL