LOC134478825 (zinc finger protein 60) - Rat Genome Database

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Gene: LOC134478825 (zinc finger protein 60) Rattus norvegicus
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Symbol: LOC134478825
Name: zinc finger protein 60
RGD ID: 402287775
Description: Predicted to enable metal ion binding activity. Predicted to be involved in positive regulation of transcription by RNA polymerase II.
Type: protein-coding
RefSeq Status: MODEL
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8192,186,524 - 92,209,706 (+)NCBIGRCr8


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (IBA)

References

Genomics


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_039100843   ⟹   XP_038956771
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8192,186,596 - 92,209,706 (+)NCBI
RefSeq Acc Id: XM_063277699   ⟹   XP_063133769
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8192,186,524 - 92,209,706 (+)NCBI
Protein Sequences
Protein RefSeqs XP_038956771 (Get FASTA)   NCBI Sequence Viewer  
  XP_063133769 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000037471
  ENSRNOP00000037471.6
Reference Protein Sequences
RefSeq Acc Id: XP_063133769   ⟸   XM_063277699
- UniProtKB: A6J9F0 (UniProtKB/TrEMBL),   D3ZR88 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038956771   ⟸   XM_039100843
- UniProtKB: A6J9F0 (UniProtKB/TrEMBL),   D3ZR88 (UniProtKB/TrEMBL)
Protein Domains
C2H2-type   KRAB

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSRNOG00000018885 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000032933.6 UniProtKB/TrEMBL
Gene3D-CATH 6.10.140.140 UniProtKB/TrEMBL
  Classic Zinc Finger UniProtKB/TrEMBL
InterPro KRAB UniProtKB/TrEMBL
  KRAB_dom_sf UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
NCBI Gene LOC134478825 ENTREZGENE
PANTHER ZINC FINGER PROTEIN UniProtKB/TrEMBL
  ZINC FINGER PROTEIN 345-RELATED UniProtKB/TrEMBL
Pfam KRAB UniProtKB/TrEMBL
  zf-C2H2 UniProtKB/TrEMBL
PhenoGen LOC134478825 PhenoGen
PROSITE KRAB UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000018885 RatGTEx
SMART KRAB UniProtKB/TrEMBL
  ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP beta-beta-alpha zinc fingers UniProtKB/TrEMBL
  KRAB domain (Kruppel-associated box) UniProtKB/TrEMBL
UniProt A6J9F0 ENTREZGENE, UniProtKB/TrEMBL
  D3ZR88 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2024-03-05 LOC134478825  zinc finger protein 60      Symbol and Name status set to provisional 70820 PROVISIONAL