| Gene: BB283400 (expressed sequence BB283400) Mus musculus |
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Analyze |
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| Symbol: |
BB283400 |
| Name: |
expressed sequence BB283400 |
| RGD ID: |
3600926 |
| MGI Page |
MGI |
| Description: |
Is expressed in retina inner nuclear layer and retina outer nuclear layer. |
| Type: |
ncrna
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| RefSeq Status: |
VALIDATED |
| Previously known as: |
BF465573; Rn; Rncr4 |
| Latest Assembly: |
GRCm39 - Mouse Genome Assembly GRCm39 |
| Position: |
| Mouse Assembly | Chr | Position (strand) | Source | Genome Browsers |
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| JBrowse | NCBI | UCSC | Ensembl |
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GRCm39 | 6 | 30,176,622 - 30,178,045 (+) | NCBI | GRCm39 | GRCm39 | mm39 | | GRCm38 | 6 | 30,176,623 - 30,178,046 (+) | NCBI | GRCm38 | GRCm38 | mm10 | GRCm38 | Celera | 6 | 30,183,444 - 30,184,872 (+) | NCBI | | Celera | | | Cytogenetic Map | 6 | A3.3 | NCBI | | | | |
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| JBrowse: |
View Region in Genome Browser (JBrowse)
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| Model |
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References
Additional References at PubMed
Genomics
QTLs in Region (GRCm39)
| 1301131 | Chol2_m | cholesterol 2 (mouse) | | | Not determined | | 6 | 1 | 32144495 | Mouse | | 5491191 | Mobq2_m | multigenic obesity QTL 2 (mouse) | | | Not determined | | 6 | 1 | 32144495 | Mouse | | 1302024 | Skull7_m | skull morphology 7 (mouse) | | | Not determined | | 6 | 1 | 32144495 | Mouse | | 15039372 | Nmrs22_m | NAFLD-associated magnetic resonance shift 22 (mouse) | | | | | 6 | 1476334 | 35476334 | Mouse | | 25440480 | Moaq2_m | modifier of alien QTL 2 (mouse) | | | | | 6 | 3050001 | 117476961 | Mouse | | 26884414 | Bzwq12_m | bi-zygomatic width QTL 12, 16 week (mouse) | | | | | 6 | 3400000 | 139076998 | Mouse | | 1300731 | Smdq3_m | segregation of mitochondrial DNA QTL 3 (mouse) | | | Not determined | | 6 | 4249206 | 38249325 | Mouse | | 1300556 | Cia6_m | collagen induced arthritis QTL 6 (mouse) | | | Not determined | | 6 | 4464884 | 87403016 | Mouse | | 11353840 | Bmiq2_m | body mass index QTL 2 (mouse) | | | | | 6 | 4503823 | 45291115 | Mouse | | 1357520 | Axtq2_m | anxiety QTL 2 (mouse) | | | Not determined | | 6 | 4503823 | 48703611 | Mouse | | 1357481 | Aaj2_m | anxiety in A/J 2 (mouse) | | | Not determined | | 6 | 4503823 | 48703611 | Mouse | | 11353841 | Bmiq3_m | body mass index QTL 3 (mouse) | | | | | 6 | 4503823 | 48703611 | Mouse | | 4142271 | Egq8_m | early growth QTL 8 (mouse) | | | Not determined | | | 4503823 | 96633110 | Mouse | | 4142232 | W6q4_m | weight 6 weeks QTL 4 (mouse) | | | Not determined | | | 4503823 | 96633110 | Mouse | | 4142126 | W3q3_m | weight 3 weeks QTL 3 (mouse) | | | Not determined | | | 4503823 | 96633110 | Mouse | | 4142361 | W10q11_m | weight 10 weeks QTL 11 (mouse) | | | Not determined | | | 4503823 | 96633110 | Mouse | | 26884441 | Sklq3_m | skull length QTL 3, 5 week (mouse) | | | | | 6 | 7600000 | 80576983 | Mouse | | 1302051 | Sluc7_m | susceptibility to lung cancer 7 (mouse) | | | Not determined | | 6 | 9297074 | 43297168 | Mouse | | 10043869 | Cia6a_m | collagen induced arthritis QTL 6a (mouse) | | | Not determined | | 6 | 12117971 | 46118069 | Mouse | | 4141749 | Obrq2_m | obesity resistance QTL 2 (mouse) | | | Not determined | | | 12751221 | 46751333 | Mouse | | 1301998 | Bts2_m | bladder tumor susceptibility 2 (mouse) | | | Not determined | | 6 | 12751221 | 46751333 | Mouse | | 27226726 | Tibmd7_m | tibia midshaft diameter 7, 16 week (mouse) | | | | | 6 | 17699999 | 53476985 | Mouse | | 1301850 | Fglu_m | fasting glucose (mouse) | | | Not determined | | 6 | 17711598 | 51711719 | Mouse | | 1301724 | Pcd4ts1_m | p-glycoprotein positive CD4 T cell subset 1 (mouse) | | | Not determined | | 6 | 17711598 | 51711719 | Mouse | | 4140989 | Spqq2_m | sperm quality QTL 2 (mouse) | | | Not determined | | | 17711598 | 51711719 | Mouse | | 1357442 | Dbts1_m | diabetes 1 (mouse) | | | Not determined | | 6 | 18234147 | 73364675 | Mouse | | 12904940 | Edlmmq5_m | extensor digitorum longus muscle mass QTL 5 (mouse) | | | | | 6 | 19616346 | 53616346 | Mouse | | 12904943 | Tammq4_m | tibialis anterior muscle mass QTL 4 (mouse) | | | | | 6 | 19616346 | 53616346 | Mouse | | 12904952 | Gmmq4_m | gastrocnemius muscle mass QTL 4 (mouse) | | | | | 6 | 19616346 | 53616346 | Mouse | | 10412213 | Sxbq2_m | SGC/Knj cross B6 QTL 2 (mouse) | | | Not determined | | 6 | 19912685 | 71299759 | Mouse | | 10412107 | Desp4_m | despair 4 (mouse) | | | Not determined | | 6 | 20049830 | 54049830 | Mouse | | 14700690 | Ccs6_m | colon cancer susceptibility 6 (mouse) | | | | | 6 | 23776934 | 57776934 | Mouse | | 13208564 | Bmiq7_m | body mass index QTL 7 (mouse) | | | | | 6 | 24999999 | 79976983 | Mouse | | 4141988 | Obrq3_m | obesity resistance QTL 3 (mouse) | | | Not determined | | | 28290993 | 62291115 | Mouse | |
Markers in Region
| BB283400 |
| Mouse Assembly | Chr | Position (strand) | Source | JBrowse |
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GRCm38 | 6 | 30,177,700 - 30,177,806 | UniSTS | GRCm38 | MGSCv37 | 6 | 30,127,700 - 30,127,806 | UniSTS | GRCm37 | Celera | 6 | 30,184,521 - 30,184,627 | UniSTS | | Whitehead/MRC_RH | 6 | 229.38 | UniSTS | |
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Expression
Sequence
| RefSeq Acc Id: |
NR_038124 |
| RefSeq Status: |
VALIDATED |
| Type: |
NON-CODING |
| Position: |
| Mouse Assembly | Chr | Position (strand) | Source |
|---|
GRCm39 | 6 | 30,176,622 - 30,178,045 (+) | NCBI | GRCm38 | 6 | 30,176,623 - 30,178,046 (+) | ENTREZGENE | Celera | 6 | 30,183,444 - 30,184,872 (+) | ENTREZGENE | cM Map | 6 | | ENTREZGENE |
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| Sequence: |
CCTAATCCCAACCTCTCACTCCCTCGTGTTAGCCCCAGTTGTGCCGAAAATGTTGAGTGAGGAG
TTAGTCCTCAGGTTCCATCTCCCTTTCCACTAATATGTATCAGCCTCGGGGATAGGGTTGCTGT
GCGGACTACAAGCCCCGAGACCAACCCACTTCTTGGGCTCTTAGGAACAGTGGGGGCCTCGTGC
TTTCAGTTTGGTCCTGTGCTCCCTCCAGCCGTGGTTTTTGTTGTTGTTGTTTTGGGGGTTTTTG
TTTTTGGGTTTTTTGGGTTGTTGTTTTGTTTTTGATATATATCTTTCTGGAATGCTCAAAGCGG
CTGTGATCTGCTTATCATATGAAGACACAATTGCCAGATTCTCTTCACCTCTATGAGCTTTGGT
TTTTCCATTTGCAAAAATGGAAAACATAAATTCTACCTCTTGCCGGGCGGTGGTGGCACACGCC
TTTAATCCCAGCACTTGGGAAGCAGAGGCAGGCAGATTTATGAGTTCGAGGCCAGCCTGGTCTA
CAAAGTGTGTAGCCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCGAAAAAAACAAATA
AAAATAAAAATAAATCTACCTCTTGCAAGACCCTGCACCCTGGTTCTGCCATGGTTTCTCAGAC
TCCTGGGAAATCTCCCTTCCCTTTTTCCACAGGGCCATTCATGGGGATGTGGGCTTACTGTGTT
GGCCCAGAATGGGCCCCAGCTCTAAGGGTGAGGCGTTGCTGTAGTATCTAGATGCTCATGGATG
GACTCTCAAAGGGCTGTTTCAAAACCCGAGTAACTCGCTGCCTCCAAGGGCTGTGTTTGTGCCT
CTGGGAGTTTCTCTCCGAGAGGCTGCAGAATCCTGGGAGTCTCTGCTGGAGCTCAGGAGAAACC
CTCCAGCTGCGGAAGGCGCGGAGGTGACCAGCCTGAAAGAATGAAACACGCCCACAAATGGAAG
GAGAGCCTCACGTCGCTCTCAAAAGAACACGAAGCCGGGCTGGAGGCGCACACCTGTAGACTCT
GCCTCAGGGCGGCTGCAGCAAGAGGATCCCAGGTTAAGGCCAGCCTGGAATGCATATCGAGTTC
CTGTTGCCCGATGCGTTAGTTAGTTAGTTAGAGCATTCATTTAAATCAGCTGAATAGGATAGAT
ATGTAGCCATATCTTGGGAATTATCTGGGCATTCAATGAAACATACAAAGGACACATCGGTTCG
TGTTTGTGAAAAAAAAAATTATGAACGGATGAGGTGTGTTTTAACGTCACCTTTTCATGTTCTA
AAGAAAATGGAAGAATTTTAACGTTTTTTTTCTTGATGTTTTTGTGATTTTTTTCTTGTGTTTT
TCTAGACTGTACCAAGCGAATTGTCTATCTATGACCTTTTAATTACAAATTAAACTCAAAAGTT
GGTTGTTTAAAAAAAA
hide sequence
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Promoters
| RGD ID: | 15093034 |
| Promoter ID: | EPDNEWNC_M944 |
| Type: | single initiation site |
| Name: | Rncr4_1 |
| Description: | retina expressed non-coding RNA 4 [Source:MGISymbol;Acc:MGI:5610274] |
| SO ACC ID: | SO:0000170 |
| Source: | EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/) |
| Experiment Methods: | Single-end sequencing. |
| Position: | | Mouse Assembly | Chr | Position (strand) | Source |
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GRCm38 | 6 | 30,172,867 - 30,172,927 | EPDNEWNC |
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Additional Information
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