TPI1P3 (triosephosphate isomerase 1 pseudogene 3) - Rat Genome Database

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Gene: TPI1P3 (triosephosphate isomerase 1 pseudogene 3) Homo sapiens
Analyze
Symbol: TPI1P3
Name: triosephosphate isomerase 1 pseudogene 3
RGD ID: 3476539
HGNC Page HGNC:38070
Description: INTERACTS WITH bisphenol A
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: PROVISIONAL
Related Functional Gene: TPI1  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386116,038,731 - 116,039,944 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl6116,038,756 - 116,039,495 (+)EnsemblGRCh38hg38GRCh38
GRCh376116,359,894 - 116,361,107 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 366116,466,612 - 116,467,686 (+)NCBINCBI36Build 36hg18NCBI36
Celera6117,102,365 - 117,103,578 (+)NCBICelera
Cytogenetic Map6q22.1NCBI
HuRef6113,939,536 - 113,940,749 (+)NCBIHuRef
CHM1_16116,623,707 - 116,624,920 (+)NCBICHM1_1
T2T-CHM13v2.06117,222,173 - 117,223,386 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
bisphenol A  (EXP)

References
Additional References at PubMed
PMID:16344560  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:317
Count of miRNA genes:293
Interacting mature miRNAs:303
Transcripts:ENST00000335020
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
RH67005  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37126,979,734 - 6,979,868UniSTSGRCh37
GRCh37177,166,410 - 77,166,541UniSTSGRCh37
Build 36176,938,998 - 76,939,129RGDNCBI36
Celera128,597,021 - 8,597,155UniSTS
Celera175,405,875 - 75,406,006RGD
Cytogenetic Map6q21-q22.3UniSTS
Cytogenetic Map6q22.1UniSTS
Cytogenetic Map1p31.1UniSTS
Cytogenetic Map12p13UniSTS
HuRef6113,940,486 - 113,940,618UniSTS
HuRef175,296,257 - 75,296,388UniSTS
HuRef6113,940,488 - 113,940,618UniSTS
HuRef126,833,463 - 6,833,597UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 2
Low 5 23 20 20 139 19 7 2 29 23 413 2 1 7
Below cutoff 410 612 334 221 331 148 753 457 519 117 211 276 73 145 528 2

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000335020
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl6116,038,756 - 116,039,495 (+)Ensembl
RefSeq Acc Id: NR_027338
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh386116,038,731 - 116,039,944 (+)NCBI
GRCh376116,359,894 - 116,361,107 (+)RGD
Celera6117,102,365 - 117,103,578 (+)RGD
HuRef6113,939,536 - 113,940,749 (+)ENTREZGENE
CHM1_16116,623,707 - 116,624,920 (+)NCBI
T2T-CHM13v2.06117,222,173 - 117,223,386 (+)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
COSMIC TPI1P3 COSMIC
Ensembl Genes ENSG00000186743 Ensembl
GTEx ENSG00000186743 GTEx
HGNC ID HGNC:38070 ENTREZGENE
Human Proteome Map TPI1P3 Human Proteome Map
NCBI Gene 728402 ENTREZGENE