FOXG1 (forkhead box G1) - Rat Genome Database

Name: FOXG1
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: FOXG1 (forkhead box G1) Pan paniscus

Analyze

Symbol:

FOXG1

Name:

forkhead box G1

RGD ID:

329347111

Description:

ENCODES a protein that exhibits sequence-specific double-stranded DNA binding (ortholog); INVOLVED IN negative regulation of DNA-templated transcription (ortholog); ASSOCIATED WITH acrocallosal syndrome (ortholog); autism spectrum disorder (ortholog); Brain-Lung-Thyroid Syndrome (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

forkhead box protein G1

RGD Orthologs

Human

Alliance Orthologs

More Info

more info ...

Latest Assembly:

Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly

Position:

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	15	30,099,139 - 30,102,183 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	14	29,315,642 - 29,321,175 (+)	NCBI		NHGRI_mPanPan1

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

acrocallosal syndrome (ISO)

autism spectrum disorder (ISO)

Brain-Lung-Thyroid Syndrome (ISO)

Developmental Disabilities (ISO)

epilepsy (ISO)

genetic disease (ISO)

intellectual disability (ISO)

microcephaly (ISO)

nervous system disease (ISO)

Nervous System Malformations (ISO)

NEURODEVELOPMENTAL DISORDER WITH MICROCEPHALY, ARTHROGRYPOSIS, AND STRUCTURAL BRAIN ANOMALIES (ISO)

Neurodevelopmental Disorders (ISO)

primary microcephaly (ISO)

Rett syndrome (ISO)

Rett Syndrome, Congenital Variant (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

negative regulation of DNA-templated transcription (ISO)

Molecular Function

protein binding (ISO)

sequence-specific double-stranded DNA binding (ISO)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

FOXG1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	15	30,099,139 - 30,102,183 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	14	29,315,642 - 29,321,175 (+)	NCBI		NHGRI_mPanPan1

FOXG1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	14	28,766,787 - 28,770,277 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	14	28,764,329 - 28,770,277 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	14	29,235,993 - 29,239,483 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	14	28,306,038 - 28,308,622 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	14	28,306,037 - 28,308,621	NCBI
Celera	14	9,101,781 - 9,104,365 (+)	NCBI		Celera
Cytogenetic Map	14	q12	NCBI
HuRef	14	9,354,165 - 9,356,212 (+)	NCBI		HuRef
CHM1_1	14	29,235,018 - 29,238,135 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	14	22,964,720 - 22,968,210 (+)	NCBI		T2T-CHM13v2.0

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_055097434	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JARIFH020000015	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XM_055097434 ⟹ XP_054953409

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	15	30,099,139 - 30,102,183 (+)	NCBI
NHGRI_mPanPan1	14	29,315,642 - 29,321,175 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_054953409	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

XP_054953409 ⟸ XM_055097434

Additional Information

External Database Links

Database	Acc Id	Source(s)
NCBI Gene	FOXG1	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM