POU4F1 (POU class 4 homeobox 1) - Rat Genome Database

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Gene: POU4F1 (POU class 4 homeobox 1) Pan paniscus
Analyze
Symbol: POU4F1
Name: POU class 4 homeobox 1
RGD ID: 329346682
Description: ENCODES a protein that exhibits chromatin binding (ortholog); DNA binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); INVOLVED IN cell migration in hindbrain (ortholog); cellular response to cytokine stimulus (ortholog); cellular response to estradiol stimulus (ortholog); PARTICIPATES IN p53 signaling pathway; ASSOCIATED WITH acute myeloid leukemia (ortholog); ATAXIA, INTENTION TREMOR, AND HYPOTONIA SYNDROME, CHILDHOOD-ONSET (ortholog); cervix uteri carcinoma in situ (ortholog); FOUND IN chromatin (ortholog); cytoplasm (ortholog); neuron projection (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: LOC129393668; POU domain, class 4, transcription factor 1; uncharacterized LOC129393668; uncharacterized protein LOC129393668
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21479,962,702 - 80,181,037 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11378,718,089 - 78,769,633 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01359,821,614 - 59,829,671 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11378,863,468 - 78,863,992 (-)NCBIpanpan1.1PanPan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
POU4F1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21479,962,702 - 80,181,037 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11378,718,089 - 78,769,633 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01359,821,614 - 59,829,671 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11378,863,468 - 78,863,992 (-)NCBIpanpan1.1PanPan1.1panPan2
POU4F1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381378,598,362 - 78,603,552 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1378,598,362 - 78,603,552 (-)EnsemblGRCh38hg38GRCh38
GRCh371379,172,497 - 79,177,687 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361378,071,228 - 78,075,696 (-)NCBINCBI36Build 36hg18NCBI36
Build 341378,071,232 - 78,075,696NCBI
Celera1360,071,661 - 60,076,129 (-)NCBICelera
Cytogenetic Map13q31.1NCBI
HuRef1359,873,428 - 59,878,003 (-)NCBIHuRef
CHM1_11379,141,107 - 79,145,483 (-)NCBICHM1_1
T2T-CHM13v2.01377,824,085 - 77,829,278 (-)NCBIT2T-CHM13v2.0
Pou4f1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3914104,699,111 - 104,705,554 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl14104,699,112 - 104,705,435 (-)EnsemblGRCm39 Ensembl
GRCm3814104,461,675 - 104,468,118 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl14104,461,676 - 104,467,999 (-)EnsemblGRCm38mm10GRCm38
MGSCv3714104,861,537 - 104,867,216 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3614103,347,999 - 103,353,678 (-)NCBIMGSCv36mm8
Celera14103,076,392 - 103,080,281 (-)NCBICelera
Cytogenetic Map14E2.3NCBI
cM Map1454.21NCBI
Pou4f1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81587,668,328 - 87,674,643 (-)NCBIGRCr8
mRatBN7.21581,253,714 - 81,260,057 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1581,257,781 - 81,259,728 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01588,618,255 - 88,622,712 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1588,620,470 - 88,622,413 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01592,114,015 - 92,118,240 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41588,535,625 - 88,539,256 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11588,553,052 - 88,553,272 (-)NCBI
Celera1580,380,878 - 80,387,018 (-)NCBICelera
Cytogenetic Map15q22NCBI
Pou4f1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495540428,812,762 - 28,818,024 (+)NCBIChiLan1.0ChiLan1.0
POU4F1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12231,992,657 - 31,997,066 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2231,792,017 - 31,794,362 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02232,315,525 - 32,317,867 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2232,315,761 - 32,317,760 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12231,977,103 - 31,979,449 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02232,014,166 - 32,016,510 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02232,086,264 - 32,088,616 (-)NCBIUU_Cfam_GSD_1.0
Pou4f1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945127,439,842 - 127,446,181 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365112,857,331 - 2,859,277 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365112,857,017 - 2,859,705 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
POU4F1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1150,730,428 - 50,732,539 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11150,729,746 - 50,732,626 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21155,418,338 - 55,421,499 (-)NCBISscrofa10.2Sscrofa10.2susScr3
POU4F1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1357,667,248 - 57,673,071 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604613,898,273 - 13,902,805 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pou4f1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475121,812,850 - 21,814,747 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475121,812,567 - 21,817,837 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_063595818   ⟹   XP_063451888
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21479,962,702 - 80,180,722 (-)NCBI
RefSeq Acc Id: XM_063595819   ⟹   XP_063451889
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21480,126,764 - 80,180,722 (-)NCBI
RefSeq Acc Id: XM_063595820   ⟹   XP_063451890
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21480,125,653 - 80,180,722 (-)NCBI
RefSeq Acc Id: XM_063595821   ⟹   XP_063451891
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21479,962,702 - 80,181,037 (-)NCBI
Protein Sequences
Protein RefSeqs XP_063451888 (Get FASTA)   NCBI Sequence Viewer  
  XP_063451889 (Get FASTA)   NCBI Sequence Viewer  
  XP_063451890 (Get FASTA)   NCBI Sequence Viewer  
  XP_063451891 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_063451891   ⟸   XM_063595821
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063451888   ⟸   XM_063595818
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063451890   ⟸   XM_063595820
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063451889   ⟸   XM_063595819
- Peptide Label: isoform X1


Additional Information

Database Acc Id Source(s)
NCBI Gene LOC129393668 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2024-03-14 POU4F1  POU class 4 homeobox 1  POU4F1  POU class 4 homeobox 1  Data Merged 737654 PROVISIONAL
2024-03-13 POU4F1  POU class 4 homeobox 1  LOC129393668  uncharacterized LOC129393668  Symbol and/or name change 5135510 APPROVED