LOC117981652 (interferon alpha-7) - Rat Genome Database

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Gene: LOC117981652 (interferon alpha-7) Pan paniscus
Analyze
Symbol: LOC117981652 (Ensembl: IFNA7)
Name: interferon alpha-7 (Ensembl:interferon alpha 7)
RGD ID: 32731790
Description: ENCODES a protein that exhibits cytokine activity (inferred); cytokine receptor binding (inferred); INVOLVED IN defense response (inferred); defense response to virus (inferred); signal transduction (inferred); FOUND IN extracellular region (inferred); extracellular space (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: interferon alpha-7-like; LOC100968579; LOC117981653
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v211103,345,519 - 103,346,438 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan19103,351,464 - 103,352,383 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0921,009,896 - 21,010,688 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1921,665,575 - 21,666,299 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl921,665,696 - 21,666,265 (-)Ensemblpanpan1.1panPan2
PanPan1.1 Ensembl921,665,696 - 21,666,265 (-)NCBIpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_034967232 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000011 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSPPAT00000042583   ⟹   ENSPPAP00000019806
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl921,665,696 - 21,666,265 (-)Ensembl
RefSeq Acc Id: XM_034967232   ⟹   XP_034823123
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v211103,345,519 - 103,346,438 (+)NCBI
NHGRI_mPanPan19103,351,464 - 103,352,383 (+)NCBI
Mhudiblu_PPA_v0921,009,896 - 21,010,688 (-)NCBI
Protein Sequences
Protein RefSeqs XP_034823123 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000019806.1
Reference Protein Sequences
RefSeq Acc Id: XP_034823123   ⟸   XM_034967232
- UniProtKB: A0A2R9AR25 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSPPAP00000019806   ⟸   ENSPPAT00000042583


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000033124 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000042583.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1250.10 UniProtKB/TrEMBL
InterPro 4_helix_cytokine-like_core UniProtKB/TrEMBL
  Interferon_alpha/beta/delta UniProtKB/TrEMBL
KEGG Report pps:100968579 UniProtKB/TrEMBL
NCBI Gene LOC117981652 ENTREZGENE
PANTHER INTERFERON ALPHA-7 UniProtKB/TrEMBL
  PTHR11691 UniProtKB/TrEMBL
Pfam Interferon UniProtKB/TrEMBL
PRINTS INTERFERONAB UniProtKB/TrEMBL
PROSITE INTERFERON_A_B_D UniProtKB/TrEMBL
SMART IFabd UniProtKB/TrEMBL
Superfamily-SCOP SSF47266 UniProtKB/TrEMBL
UniProt A0A2R9AR25 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-04-25 LOC117981652  interferon alpha-7  LOC117981652  interferon alpha-7-like  Symbol and/or name change 5135510 APPROVED
2023-04-20 LOC117981652  interferon alpha-7-like  LOC100968579  interferon alpha-7  Data merged from RGD:11715753 737654 PROVISIONAL
2023-04-20 LOC117981652  interferon alpha-7-like  LOC117981653  interferon alpha-7  Data merged from RGD:32730733 737654 PROVISIONAL