SOX7 (SRY-box transcription factor 7) - Rat Genome Database

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Gene: SOX7 (SRY-box transcription factor 7) Pan paniscus
Analyze
Symbol: SOX7
Name: SRY-box transcription factor 7
RGD ID: 32731567
Description: ENCODES a protein that exhibits DNA-binding transcription factor activity (ortholog); DNA-binding transcription factor activity, RNA polymerase II-specific (ortholog); sequence-specific DNA binding (ortholog); INVOLVED IN endoderm formation (ortholog); negative regulation of cell population proliferation (ortholog); negative regulation of DNA-templated transcription (ortholog); ASSOCIATED WITH congenital diaphragmatic hernia (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: transcription factor SOX-7
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2727,180,826 - 27,187,703 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan183,213,289 - 3,220,167 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v088,476,357 - 8,483,144 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
SOX7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2727,180,826 - 27,187,703 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan183,213,289 - 3,220,167 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v088,476,357 - 8,483,144 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
SOX7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38810,723,768 - 10,730,511 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl810,723,768 - 10,730,511 (-)EnsemblGRCh38hg38GRCh38
GRCh37810,581,278 - 10,588,021 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36810,618,688 - 10,625,432 (-)NCBINCBI36Build 36hg18NCBI36
Build 34810,618,688 - 10,625,432NCBI
Celera89,709,191 - 9,716,191 (-)NCBICelera
Cytogenetic Map8p23.1NCBI
HuRef89,511,594 - 9,518,400 (-)NCBIHuRef
CHM1_1810,646,800 - 10,653,606 (-)NCBICHM1_1
T2T-CHM13v2.089,008,562 - 9,015,305 (+)NCBIT2T-CHM13v2.0
Sox7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391464,181,155 - 64,188,181 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1464,181,122 - 64,188,181 (+)EnsemblGRCm39 Ensembl
GRCm381463,943,706 - 63,950,732 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1463,943,673 - 63,950,732 (+)EnsemblGRCm38mm10GRCm38
MGSCv371464,562,543 - 64,569,569 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361462,897,816 - 62,904,842 (+)NCBIMGSCv36mm8
Celera1461,720,720 - 61,727,748 (+)NCBICelera
Cytogenetic Map14D1NCBI
cM Map1433.34NCBI
Sox7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81542,356,405 - 42,363,166 (+)NCBIGRCr8
mRatBN7.21538,180,503 - 38,187,264 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1538,180,503 - 38,187,264 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1540,037,796 - 40,044,594 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01541,188,477 - 41,195,275 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01539,641,092 - 39,647,853 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01547,293,699 - 47,300,460 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1547,293,699 - 47,300,460 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01551,053,093 - 51,059,854 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41543,207,965 - 43,214,726 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11543,223,666 - 43,228,547 (+)NCBI
Celera1537,862,141 - 37,868,902 (+)NCBICelera
Cytogenetic Map15p12NCBI
Sox7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540352,253,482 - 52,259,884 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540352,253,816 - 52,259,884 (-)NCBIChiLan1.0ChiLan1.0
SOX7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12527,216,111 - 27,222,142 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2527,215,528 - 27,220,227 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2527,871,952 - 27,889,698 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02527,370,450 - 27,388,195 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2527,370,562 - 27,377,493 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12527,324,552 - 27,342,303 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02527,218,744 - 27,236,487 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02527,372,604 - 27,390,369 (+)NCBIUU_Cfam_GSD_1.0
Sox7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049435,963,679 - 5,970,072 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366752,616,077 - 2,622,436 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366752,616,086 - 2,622,436 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SOX7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1413,938,388 - 13,945,166 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11413,938,381 - 13,945,324 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21415,286,380 - 15,293,330 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SOX7
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.188,368,632 - 8,375,529 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl88,368,912 - 8,375,530 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605234,052,909 - 34,059,785 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sox7
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475824,556,010 - 24,562,213 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475824,556,436 - 24,562,204 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_034965623 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_034965623   ⟹   XP_034821514
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2727,180,826 - 27,187,703 (-)NCBI
NHGRI_mPanPan183,213,289 - 3,220,167 (-)NCBI
Mhudiblu_PPA_v088,476,357 - 8,483,144 (+)NCBI
Protein Sequences
Protein RefSeqs XP_034821514 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_034821514   ⟸   XM_034965623


Additional Information

Database Acc Id Source(s)
NCBI Gene SOX7 ENTREZGENE